New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5714441	44 (0.780)	3 (0.060)	3/250	NT	6.4%	coding (195/393 nt)	hisI	phosphoribosyl‑AMP cyclohydrolase
	?	NC_002947	= 5714473	46 (0.840)					coding (227/393 nt)	hisI	phosphoribosyl‑AMP cyclohydrolase

ATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGTCCTGAAGGACCCGGATG  >  NC_002947/5714334‑5714616                                                                                                                                            |                                                                                                                                                atgatgGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACtgt                                                                                                                                          <  7:225138/147‑1 (MQ=255) atgatgGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGa                                                                                                                                        >  7:292919/1‑149 (MQ=255)   gatgGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGAAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTACGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACg                                                                                                                                      >  3:321566/1‑149 (MQ=255)                aaCCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGatcat                                                                                                                         >  3:145920/1‑149 (MQ=255)                 aCCGTGAATCGCTGTCCCTGACCGCCGCCGCGCAGCGTGCCATCTACTGGTCGCGTTCCCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACTCCGACGTGatcatc                                                                                                                        <  6:94278/149‑1 (MQ=255)                  ccGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATcc                                                                                                                       >  2:167068/1‑149 (MQ=255)                           gCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGAGGCCGACGTGATCATCCTGATGGTc                                                                                                               <  8:232862/148‑1 (MQ=255)                            cTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGa                                                                                                             <  1:141450/149‑1 (MQ=255)                            cTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGa                                                                                                             <  1:167068/149‑1 (MQ=255)                                cccTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCaa                                                                                                         <  6:336680/149‑1 (MQ=255)                                    gACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGAGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTgg                                                                                                     >  5:250916/1‑149 (MQ=255)                                     acagccgccgAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGTCTAGCTGGGGCGTAAAGGCGTCGAGTCCGGGCATGTGCAAAAACTCCATGAGTAGCGCCTGGACTTTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTggg                                                                                                    <  8:258919/146‑1 (MQ=255)                                       cgccgccgAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGcc                                                                                                  <  2:362124/149‑1 (MQ=255)                                                   gcGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATgg                                                                                                                 >  6:269818/1‑122 (MQ=255)                                                   gcGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATgg                                                                                                                 <  5:269818/122‑1 (MQ=255)                                                      tGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATa                                                                                   >  4:358299/1‑149 (MQ=255)                                                       gCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATAc                                                                                  <  8:292919/149‑1 (MQ=255)                                                          aTCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTgg                                                                                                     >  1:161887/1‑127 (MQ=255)                                                          aTCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTgg                                                                                                     <  2:161887/127‑1 (MQ=255)                                                                  gTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGa                                                                         >  5:366288/1‑147 (MQ=255)                                                                     gcgttcgcgtGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGaaa                                                                       >  6:266242/1‑146 (MQ=255)                                                                     gcgttcgcgtGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGaaa                                                                       <  5:266242/146‑1 (MQ=255)                                                                          cgctttgCAAGCGGTGGCGTAAAGGCGAGGAGTCCGGGCATGAGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCtt                                                                <  6:250916/142‑1 (MQ=255)                                                                             gtGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTAc                                                            >  4:45973/1‑149 (MQ=255)                                                                              tGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTAcc                                                           >  6:107318/1‑149 (MQ=255)                                                                                gCAAGCTGTGGCGTAAAGGCGAGGAGTCCGTGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACcgc                                                         <  4:321566/149‑1 (MQ=255)                                                                                gCAAGCTGTGGCGTAAAGGCGAGGAGGCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGCCTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACcgc                                                         <  6:225818/149‑1 (MQ=255)                                                                                 cAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACcgcg                                                        >  5:351450/1‑149 (MQ=255)                                                                                     cTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTa                                                    <  5:329903/149‑1 (MQ=255)                                                                                           cGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGa                                              <  4:145920/149‑1 (MQ=255)                                                                                            gTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGAc                                             >  7:276932/1‑149 (MQ=255)                                                                                            gTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGAc                                             >  7:157724/1‑149 (MQ=255)                                                                                            gTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGAc                                             >  2:331523/1‑149 (MQ=255)                                                                                                    gaggagTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTggactcctcgcctttacgccacagcttgccacgcgaacgcgaccagtagatggcacgctgctcggcggcggtcagggccagcgattcacggttcatccaggccatcat                                     <  1:172595‑M2/149‑109 (MQ=255)                                                                                                         gTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTggactcctcgcctttacgccacagcttgccacgcgaacgcgaccagtagatggcacgctgctcggcggcggtcagggccagcgattcacgg                                                      >  1:138147‑M2/1‑36 (MQ=255)                                                                                                         gTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTggactcctcgcctttacgccacagcttgccacgcgaacgcgaccagtagatggcacgctgctcggcggcggtcagggccagcgattcacgg                                                      <  2:138147‑M2/127‑92 (MQ=255)                                                                                                            cGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAgctgc                                                                  <  6:357896/112‑1 (MQ=255)                                                                                                            cGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAgctgc                                                                  >  5:357896/1‑112 (MQ=255)                                                                                                             gggCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAAtcgt                            <  1:331523/149‑1 (MQ=255)                                                                                                                 aTGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGAc                        <  3:45973/149‑1 (MQ=255)                                                                                                                  tgtgCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGAcc                       <  6:366288/149‑1 (MQ=255)                                                                                                                      cAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCgg                    >  4:190225/1‑148 (MQ=255)                                                                                                                      cAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGt                   >  5:356272/1‑149 (MQ=255)                                                                                                                          aaCTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGTCCTg               <  8:157724/149‑1 (MQ=255)                                                                                                                            cTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGTCCTGaa             <  3:358299/149‑1 (MQ=255)                                                                                                                               cATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGTCCTGAAGGa          >  6:105989/1‑149 (MQ=255)                                                                                                                                  gAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGTCCTGAAGGAccc       >  6:132513/1‑149 (MQ=255)                                                                                                                                  gAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGTCCTGAAGGAccc       >  7:295478/1‑149 (MQ=255)                                                                                                                                     ttGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGTCCTGAAGGACCCGGa    <  5:132513/149‑1 (MQ=255)                                                                                                                                       gcgcCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGTCCTGAAGGACCCGGAt   <  3:190225/148‑1 (MQ=255)                                                                                                                                       gcgcCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGTCCTGAAGGACCCGGAt   <  5:105989/148‑1 (MQ=255)                                                                                                                                        cgacTGGAATTTGACGCCGACGTTATCATCCTGATTGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGTCCTGAAGGACCCGGATg  <  8:276932/145‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                ATGATGGCCTGGATGAACCGTGAATCGCTGGCCCTGACCGCCGCCGAGCAGCGTGCCATCTACTGGTCGCGTTCGCGTGGCAAGCTGTGGCGTAAAGGCGAGGAGTCCGGGCATGTGCAAAAACTGCATGAGTTGCGCCTGGACTGTGACGCCGACGTGATCATCCTGATGGTCGAGCAACTGGGCCATATCGCCTGCCATACCGGTCGTGAAAGCTGCTTCTACCGCGTCTATGAAGACGGCCAGTGGAAAATCGTCGACCCGGTCCTGAAGGACCCGGATG  >  NC_002947/5714334‑5714616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.