New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5594092 =	41 (0.720)	7 (0.160)	5/204	NT	22.2%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594185 =	17 (0.380)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

ATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATCG  >  NC_002947/5594047‑5594331                                                                                                                                           |                                                                                                                                                    aTGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCTAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGAGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCg                                                                                                                                           <  6:2276/149‑1 (MQ=255) aTGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTTCTTGCTTAGCGGGCAAGCCCGCTCCCACAGGGTAAGGtgctggg                                                                                                                                           >  4:202818/1‑147 (MQ=255)   gtgatggtctggTCGGCTGGAGTGATGTTTCGTGGCATACACCACCCGGTGGGAGCGGGGTGGCCCGCTAACACGGGCAACGCGGGTGCCATGCACCGCAGTGGTTGGTGCGCGGGCATGCCCGCTCCCACAGGGTAAGGTGCTGCgg                                                                                                                                          <  4:300408/145‑1 (MQ=21)          tcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCAACGCAGTGCTTGCTTCGCGGGCAAGCCCGCTACCACAGCGTAAGGTGCTGCGGTTTAGaat                                                                                                                                  >  5:94374/1‑147 (MQ=255)               tCCGCAGTAGTTTTGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt‑g                                                                                                                            <  2:216782/149‑1 (MQ=255)                   cAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACAACGGCAAAGCCGGGGCCATGCACCGCAGTGGTTGCTTAGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCGGGGGTTTAGACTTTGT‑GGTa                                                                                                                         >  6:130426/1‑148 (MQ=37)                    aGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACa                                                                                                                       <  7:92992/149‑1 (MQ=255)                       aGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAgct                                                                                                                    <  6:370024/149‑1 (MQ=255)                          gATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAgctggc                                                                                                                 >  7:336658/1‑149 (MQ=255)                                            ccaccCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGACATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGGCTTTGT‑GGTAGAGCTGGCTGCCTTCCTGGCGGAAcc                                                                                               >  3:220809/1‑149 (MQ=255)                                                    TGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTTGGTACAGCTGGCTGCCTTCCTGGCGGAACCTCTCg                                                                                          >  1:237265‑M1/1‑147 (MQ=255)                                                      GGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt‑g                                                                                                                            <  2:282542‑M1/110‑1 (MQ=255)                                                      GGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTACCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt‑g                                                                                                                            >  1:282542‑M1/1‑110 (MQ=255)                                                           GGGCTTCCCCGCTAACACCGGCAACGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGCCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCAc                                                                                >  3:202818‑M1/1‑149 (MQ=255)                                                               TTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCAt                                                                            <  8:119047‑M1/149‑1 (MQ=255)                                                                  CCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGcc                                                                         <  1:65710‑M1/149‑1 (MQ=255)                                                                   ccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtGAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCt                                                                        >  8:46785‑M2/73‑149 (MQ=255)                                                                   ccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCt                                                                        >  8:77342‑M2/73‑149 (MQ=255)                                                                   CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCt                                                                        <  5:60412‑M1/149‑1 (MQ=255)                                                                   CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCt                                                                        <  4:186931‑M1/149‑1 (MQ=255)                                                                    cgcgaagcaagcactgcggtgcattgcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCtt                                                                       >  4:258468‑M2/72‑149 (MQ=255)                                                                    cgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGTACCGCTCGGCCTGCTCACGCATGCCtt                                                                       >  1:45784‑M2/72‑149 (MQ=255)                                                                    CGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACtt                                                                                                                                 <  4:184319‑M1/92‑1 (MQ=255)                                                                    CGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACtt                                                                                                                                 >  3:184319‑M1/1‑92 (MQ=255)                                                                      cgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGc                                                                     <  7:77342‑M2/80‑1 (MQ=255)                                                                      CGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGc                                                                     >  8:336658‑M1/1‑149 (MQ=255)                                                                         ACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTACCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTc                                                                   <  8:248883‑M1/148‑1 (MQ=255)                                                                             cGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCg                                                              >  3:197105/1‑149 (MQ=255)                                                                                  aaGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTcaca                                                         >  4:304820/1‑149 (MQ=255)                                                                                    gCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGGACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATc                                                       >  3:127899/1‑149 (MQ=255)                                                                                            ggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCt                                               >  8:143988‑M2/48‑149 (MQ=255)                                                                                                cACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCg                                                                                          <  1:108207/102‑1 (MQ=255)                                                                                                cACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCg                                                                                          >  2:108207/1‑102 (MQ=255)                                                                                                 aCCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATc                                          >  8:103341/1‑149 (MQ=255)                                                                                                    gCAGTGCTTGCTTCGCGGGCAAGCCCTCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTg                                       <  7:119047/149‑1 (MQ=255)                                                                                                    ctttgccggtgttcgcgggcaagcccgctcccacagggtGAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTg                                       <  7:46785‑M2/110‑1 (MQ=255)                                                                                                          cttgcttCGCGTGAATGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCg                                 <  6:94374/149‑1 (MQ=255)                                                                                                             gcttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTAc                              >  1:100521/1‑149 (MQ=255)                                                                                                               ttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACt                             >  1:99955‑M2/29‑148 (MQ=255)                                                                                                                tcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTgg                                      >  4:220355‑M2/28‑138 (MQ=255)                                                                                                                tcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTgg                                      <  3:220355‑M2/111‑1 (MQ=255)                                                                                                                 cgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCa                           <  2:65710‑M2/122‑1 (MQ=255)                                                                                                                  gcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACg                         >  3:52042‑M2/26‑149 (MQ=255)                                                                                                                          gcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACt                     <  5:11785‑M2/128‑1 (MQ=255)                                                                                                                          gcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACt                     >  6:11785‑M2/18‑145 (MQ=255)                                                                                                                          gcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCt                 <  6:60412‑M2/132‑1 (MQ=255)                                                                                                                            ccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTgg               <  3:304820‑M2/134‑1 (MQ=255)                                                                                                                            ccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTgg               <  4:127899‑M2/134‑1 (MQ=255)                                                                                                                              gctcccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGt             <  2:183941‑M2/136‑1 (MQ=255)                                                                                                                               ctcccacagggtAAGGTGATGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGt             >  6:193744‑M2/13‑148 (MQ=255)                                                                                                                                  ccacagggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGTACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATc         <  2:45784‑M2/140‑1 (MQ=255)                                                                                                                                      agggtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCa     <  7:248883‑M2/144‑1 (MQ=255)                                                                                                                                         gtAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATCg  <  4:52042‑M2/147‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                    ATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGT‑GGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATCG  >  NC_002947/5594047‑5594331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.