New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5943622	28 (0.490)	4 (0.090)	4/216	NT	11.7%	intergenic (+30/+55)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
	?	NC_002947	= 5943643	37 (0.790)					intergenic (+51/+34)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein

GTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCGTGGTG  >  NC_002947/5943497‑5943788                                                                                                                                                   |                                                                                                                                                  gtgtCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAg                                                                                                                                                  >  8:322536‑M2/1‑147 (MQ=255)       cAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAgggtttac                                                                                                                                           <  1:207944‑M2/149‑9 (MQ=255)        aGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAgggtttacc                                                                                                                                          <  7:180922‑M2/149‑10 (MQ=255)          aCTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAgggtttacccg                                                                                                                                        >  6:81914‑M2/1‑138 (MQ=255)            ttATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAg                                                                                                                                                  <  4:322389‑M2/137‑2 (MQ=255)            ttATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAg                                                                                                                                                  >  3:322389‑M2/1‑136 (MQ=255)                 cACTGGCAGAAGCCTGGGTTTCTATCGAGAAGCTGGGTCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAgggtttacccgcgaagag                                                                                                                                 >  4:305753‑M2/1‑131 (MQ=255)                  aCTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAgggtttacccgcgaagagg                                                                                                                                <  7:320191‑M2/149‑20 (MQ=255)                                       tATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACt                                                                                                           >  4:263784/1‑149 (MQ=255)                                       tATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTAGCGGGTAAACCCGCGGCAACAGGCGACCGTGGAGGGGTTTCCCGCGAAGAGGCCGGGACAGGTTGCGCGCACt                                                                                                           >  3:16921/1‑149 (MQ=255)                                        aTCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCt                                                                                                                 >  8:9609/1‑142 (MQ=255)                                        aTCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCt                                                                                                                 <  7:9609/142‑1 (MQ=255)                                                  tGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTcac                                                                                                              >  7:88039/1‑135 (MQ=255)                                                  tGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTcac                                                                                                              <  8:88039/135‑1 (MQ=255)                                                     ggatcgggCTGGGTGTGGTTATGTGGGTGGGGCGGCCCTGGAACGTCATTCGCGGCGTTTTCGGGGTAAAACCCGCTCCAACCGGCCACGGTGCCGGG‑TTACCCGCGAAGTGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTgg                                                                                            <  4:169505/143‑1 (MQ=255)                                                     ggCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATtgtg                                                                                             <  2:207944/149‑1 (MQ=255)                                                      gCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTgg                                                                                            <  8:320191/149‑1 (MQ=255)                                                                      ggTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCt                                                                                    >  3:74852/1‑141 (MQ=255)                                                                      ggTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCt                                                                                    <  4:74852/141‑1 (MQ=255)                                                                       gTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTAGCGGGTAAACCCGCTGCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTAGCGCAGATTGTGGCAACGCCTGAATCccgc                                                                           >  1:202768/1‑149 (MQ=255)                                                                        tAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGc                                                                                                                  >  7:341296/1‑109 (MQ=255)                                                                        tAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGc                                                                                                                  <  8:341296/109‑1 (MQ=255)                                                                                        gCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCgg                                                          <  3:263784/149‑1 (MQ=255)                                                                                        gCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCgg                                                          <  8:180922/149‑1 (MQ=255)                                                                                               aaGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCt                                                                                    <  2:43408/116‑1 (MQ=255)                                                                                               aaGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCt                                                                                    >  1:43408/1‑116 (MQ=255)                                                                                                aGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTgg                                                  >  7:180598/1‑149 (MQ=255)                                                                                                 ggCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGt                                                 <  7:21451/149‑1 (MQ=255)                                                                                                      tAGCGGCCTCATCGCGGGTAAAACCGCACCTACAGGCGACCGTGGAGGGTTTACCCGCGAAGAGGCCGGAACACGTTGCTCACACTTAGCGCAGATTGTGGCAACGCCTGAAAAGCGCGTCCAGGTTTCGATCGGGCATATGGTGACTg                                            >  2:325002/1‑149 (MQ=37)                                                                                                           gCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAg                                       >  1:212014/1‑149 (MQ=255)                                                                                                              tctTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTg                                     >  8:178267/1‑148 (MQ=255)                                                                                                              tctTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTGTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGGTGCGATCGGGCATCTGGTGACTGCGCAGTg                                     >  5:258811/1‑148 (MQ=255)                                                                                                                    cgGGTAAACCCGCTCCTACCGTCGACCTTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCaa                              <  8:180598/149‑1 (MQ=255)                                                                                                                     gggTAAACCCGCTCCTACAGGCGACCGTGCAgggtttacccgcgaagaggccgctactgccttacctggccagcaccaccaacttacccacagcctgccgttgccccagcttctcgatagcaaccccggcttctgccagtggataagtc                             <  1:362574‑M2/149‑119 (MQ=255)                                                                                                                       gTAAACCCGCTCCTACAGGCGACCGTGCAgggtttacccgcgaagaggccgctactgccttacctggccagcaccaccaacttacccacagcctgccgttgccccagcttctcgata                                                           <  2:322689‑M2/117‑89 (MQ=255)                                                                                                                       gTAAACCCGCTCCTACAGGCGACCGTGCAgggtttacccgcgaagaggccgctactgccttacctggccagcaccaccaacttacccacagcctgccgttgccccagcttctcgata                                                           >  1:322689‑M2/1‑29 (MQ=255)                                                                                                                            cccGCTCCTACAGGCGATCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCt                      >  3:108910/1‑149 (MQ=255)                                                                                                                            cccGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCt                      >  3:348911/1‑149 (MQ=255)                                                                                                                             ccGCTCCTACAGGCGACCGTGCAgggtttacccgcgaagaggccgctactgccttacctggccagcaccaccaacttacccacagcctgccgttgccccagcttctcgatagcaaccccggcttct                                            >  8:331224‑M2/1‑23 (MQ=255)                                                                                                                             ccGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTTCGATCGGGCATCt                                                    >  6:263953/1‑118 (MQ=255)                                                                                                                             ccGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCt                                                    <  5:263953/118‑1 (MQ=255)                                                                                                                             ccGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTc                     >  3:195797/1‑149 (MQ=255)                                                                                                                              cccTCCTACAGGCGACCGTGCAGGGTTTACCCGCCAAGAGGCCGGAACACCTTGCTCACACATCGCACAGATTGTGGCAACGCCTGAATCGCGCTTCCAGCTTGCGATCGGCCATCTCGTGACTGCCCACTGCAATCAACGACTGCTc                     >  4:62016/3‑148 (MQ=255)                                                                                                                                cTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGAc                  <  4:16921/149‑1 (MQ=255)                                                                                                                                     aCAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACt             >  8:86682/1‑149 (MQ=255)                                                                                                                                         gCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCcg         >  4:333357/1‑149 (MQ=255)                                                                                                                                          cGACCGTGCAGTGTTTACCCGCGAAGAGGCCGTAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCGGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCACTGCATTCAAGGTCTGCTCGACATACTCCcgc        <  6:258811/149‑1 (MQ=255)                                                                                                                                           gACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCcgcg       >  8:72947/1‑149 (MQ=255)                                                                                                                                           gACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCcgcg       >  3:243033/1‑149 (MQ=255)                                                                                                                                               gTGCAGGGTTTACCCGCGAAGAGGCCTGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCgtggt   <  2:202768/149‑1 (MQ=255)                                                                                                                                                tGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCgtggtg  >  7:306262/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GTGTCGCAGACTTATCCACTGGCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCGTGGTG  >  NC_002947/5943497‑5943788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.