New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 230329 = | 49 (0.830) | 3 (0.050) | 3/244 | NT | 6.2% | coding (862/876 nt) | PP_0178 | efflux pump |
? | NC_002947 | 230365 = | 44 (0.790) | coding (26/1419 nt) | PP_0179 | putative efflux transporter |
GACGCTGTCGGCATCCTGGCGCAGCGGGCCGTTCAGGTCATTGCGTTGCACGGCCGCATCCCCAGGCACCTCATAGTCGGGCCCCACCATCATGCAGGCCCCCAGCGACAGGCACAGGCCAGCCAGGATCAGCTGTTTCATGGGCGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/230480‑230329 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTCCCCGAGGACTGGTGG > NC_002947/230365‑230510 GACGCTGTCGGCATCCTGGCGCAGCGGGCCGTTCAGGTCATTGCGTTGCACGGCCGCATCCCCAGGCACCTCATAGTCGGGCCCCACCATCATGCAGGCCCCCAGCGACAGGCACAGGCCAGCCAGGATCAGCTGTTTCATGGGCGCTG > 5:232885/1‑149 GACGCTGTCGGCATCCTGGCGCAGCGGGCCGTTCAGGTCATTGCGTTGCACGGCCGCATCCCCAGGCACCTCATAGTCGGGCCCCACCATCATGCAGGCCCCCAGCGACAGGCACAGGCCAGCCAGGATCAGCTGTTTCATGGGCGCTG > 7:349151/1‑149 ACAGGCACAGGCCAGCCAGGATCAGCTGTTTCATGGGCGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAAC < 7:203516/117‑1 ACAGGCACAGGCCAGCCAGGATCAGCTGTTTCATGGGCGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAAC > 8:203516/1‑117 CAGGCCAGCCAGGATCAGCTGTTTCATGGGCGCTGGCCTGTGCCTGTCGATGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGA > 5:378657/1‑147 TGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCC < 1:258023/112‑1 TGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCC > 2:258023/1‑112 GGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTCCCCGAGGACTGGTG > 8:256730/1‑149 CTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTCCCCGAGGACTGGTGG > 4:149027/1‑147 GACGCTGTCGGCATCCTGGCGCAGCGGGCCGTTCAGGTCATTGCGTTGCACGGCCGCATCCCCAGGCACCTCATAGTCGGGCCCCACCATCATGCAGGCCCCCAGCGACAGGCACAGGCCAGCCAGGATCAGCTGTTTCATGGGCGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/230480‑230329 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTCCCCGAGGACTGGTGG > NC_002947/230365‑230510 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |