New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	230329 =	49 (0.830)	3 (0.050)	3/244	NT	6.2%	coding (862/876 nt)	PP_0178	efflux pump
	?	NC_002947	230365 =	44 (0.790)					coding (26/1419 nt)	PP_0179	putative efflux transporter

TCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTCCCCGAGGACTGGTGG  >  NC_002947/230219‑230510                                                                                                                                                   |                                                                                                                                                  tCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgt                                                                                                                                                 >  1:193312/1‑149 (MQ=255)  tcggcatcctggcgcagcgggccgttcaggtcattgcgttgcacggccgcatccccaggcacctcatagtcgggccccaccatcatgcaggcccccatcgacaggcacaGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctg                                                                                                                                                  >  5:378657‑M1/110‑147 (MQ=255)  cAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgt                                                                                                                                                 <  1:208539/148‑1 (MQ=255)   aGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgtgc                                                                                                                                               <  2:28560/149‑1 (MQ=255)     cTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgtgcct                                                                                                                                             >  3:54981/1‑149 (MQ=255)        ggTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgtgcctgt                                                                                                                                           <  4:54981/148‑1 (MQ=255)         gTACGCCTGGCCAAGCGCATTCCGGTGAGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGCGCGTACTGCGAAGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCAGATCCTGGCTGgcctgtgcatgtag                                                                                                                                         >  8:349151/1‑147 (MQ=255)            cGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTg                                                                                                                                      >  8:338864/1‑149 (MQ=255)              ccTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGCCGTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCAGGAAACCGCTGAGGCTGGCTGGCCTGTGCCGGGCGCTggg                                                                                                                                    >  8:78209/1‑149 (MQ=255)               cTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCATGACTTCCGCATGATCGCCGTGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAATCTGCTGAACCTGGCTGGCCTGTGCCTGTCGCTgggg                                                                                                                                   <  4:224463/149‑1 (MQ=255)               cTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTgggg                                                                                                                                   <  2:296144/149‑1 (MQ=255)                   cccAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCt                                                                                                                               <  5:335402/149‑1 (MQ=255)                     cAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTg                                                                                                                              >  5:228378/1‑148 (MQ=255)                          cATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCatgat                                                                                                                        <  4:314872/149‑1 (MQ=255)                           aTTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGAGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCatgatg                                                                                                                       >  6:232885/1‑149 (MQ=255)                               cGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTgg                                                                                                                                     >  1:14741/1‑131 (MQ=255)                               cGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTgg                                                                                                                                     <  2:14741/131‑1 (MQ=255)                                ggTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTggg                                                                                                                  <  7:338864/149‑1 (MQ=255)                                ggTGAGCATCGGCGTTGACGAAGGGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTTCGAGGGGGTCGTTCATCGATGTCCAGCGCCCATGACACAGCTGATCCTGGCGGGCCTGTGCCTGTCGCTGGGGGCCTTCATGATGGTggg                                                                                                                  <  7:160604/149‑1 (MQ=255)                                 gTGGGCATGGCCTTTGACTAAGTGCCGCAAGACTTCAGCATGATCGCCGGGGGTACTGCGAGGGTGTCGATGATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTgggt                                                                                                                 <  4:244346/149‑2 (MQ=255)                                    cgcATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGccc                                                                                                              <  8:295507/149‑1 (MQ=255)                                    cgcATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGcc                                                                                                               <  5:320168/148‑1 (MQ=255)                                       gttgcacggccgcatccccaggcacctcatagtcgggccccaccatcatgcaggcccccagcgacaggcacaGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgtgcctgt                                                                                                                                           >  8:203516‑M1/73‑117 (MQ=255)                                       gttgcacggccgcatccccaggcacctcatagtcgggccccaccatcatgcaggcccccagcgacaggcacaGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgtgcctgt                                                                                                                                           <  7:203516‑M1/45‑1 (MQ=255)                                            cTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGa                                                                                                      <  6:228378/149‑1 (MQ=255)                                            cTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGa                                                                                                      <  2:193312/149‑1 (MQ=255)                                                           gCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGc                                                                                       >  4:134513/1‑149 (MQ=255)                                                                 cTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGt                                                                                 <  2:341067/149‑1 (MQ=255)                                                                       cATGATCGCCGGGCGTACTGCGCCGGTGTCGATCTTCGAGGGCCTGCGCCCATGAAACAGGTGATCCTGGCTGGCCTTTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGATTATGTGGTGCCTGGGGATGCGGCCGTGCAACg                                                                           <  7:235994/149‑1 (MQ=255)                                                                       cATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACg                                                                           <  3:134513/149‑1 (MQ=255)                                                                          gATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCaa                                                                        >  3:183578/1‑149 (MQ=255)                                                                            tCGCCCGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAAt                                                                       >  1:344409/1‑148 (MQ=255)                                                                                           cGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGc                                                       >  3:22112/1‑149 (MQ=255)                                                                                           cGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGc                                                       >  7:324197/1‑149 (MQ=255)                                                                                                      atcatcGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGa                                                                                                            >  2:165050/1‑85 (MQ=255)                                                                                                      acaggcacaggccagccaggatcagctgtttcatgggcgctggccTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAAc                                                                            >  8:203516‑M2/46‑117 (MQ=255)                                                                                                      acaggcacaggccagccaggatcagctgtttcatgggcgctggccTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAAc                                                                            <  7:203516‑M2/72‑1 (MQ=255)                                                                                                         atcGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGcc                                         >  4:160748/1‑149 (MQ=255)                                                                                                         atcGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCGGTGCCGGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGc                                          <  7:78209/148‑1 (MQ=255)                                                                                                             caggccagccaggatcagctgtttcatgggcgctggccTGTGCCTGTCGATGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGa                                       >  5:378657‑M2/39‑147 (MQ=255)                                                                                                             aGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGa                                       >  8:147519/1‑147 (MQ=255)                                                                                                                  CAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGcgtc                                >  5:232885‑M1/1‑149 (MQ=255)                                                                                                                  CAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGcgtc                                >  7:349151‑M1/1‑149 (MQ=255)                                                                                                                         cATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAg                         >  3:76173/1‑149 (MQ=255)                                                                                                                          aTGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGcgtcgt                              <  2:291444/143‑1 (MQ=255)                                                                                                                          aTGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGcgtcgt                              >  1:291444/1‑143 (MQ=255)                                                                                                                          aTGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATCCCGACAGCGACGTGACAgc                        >  8:233078/1‑149 (MQ=255)                                                                                                                              aaCAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTggg                                                                                                                  >  7:160950/1‑55 (MQ=255)                                                                                                                              aaCAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTggg                                                                                                                  <  8:160950/55‑1 (MQ=255)                                                                                                                              aaCAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCg                    <  8:324197/149‑1 (MQ=255)                                                                                                                                   cTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTACATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTccc               >  1:158768/1‑149 (MQ=255)                                                                                                                                    tGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTcccc              >  6:181587/1‑149 (MQ=255)                                                                                                                                     gATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTcccc              >  2:263007/1‑148 (MQ=255)                                                                                                                                     gATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTcccc              >  8:44176/1‑148 (MQ=255)                                                                                                                                      aTCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTCCCCGa            <  7:147519/149‑1 (MQ=255)                                                                                                                                              tggccTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGcc                                         >  2:258023‑M2/6‑112 (MQ=255)                                                                                                                                              tggccTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGcc                                         <  1:258023‑M2/107‑1 (MQ=255)                                                                                                                                               ggccTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTCCCCGAGGACtggtg   >  8:256730‑M2/5‑149 (MQ=255)                                                                                                                                                  cTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTCCCCGAGGACtggtgg  >  4:149027‑M2/2‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                  TCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGACAGCGTCGTGTCAGCGCCGGTCCCCGAGGACTGGTGG  >  NC_002947/230219‑230510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.