New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	230329 =	49 (0.830)	3 (0.050)	3/244	NT	6.2%	coding (862/876 nt)	PP_0178	efflux pump
	?	NC_002947	230365 =	44 (0.790)					coding (26/1419 nt)	PP_0179	putative efflux transporter

GTGGCGCCAACCTGCTGCCCAACGTCAACCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGA  >  NC_002947/230183‑230473                                                                                                                                                   |                                                                                                                                                 gTGGCGCCAACCTGCTGCCCAACGTCAACCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGc                                                                                                                                                >  3:244346/1‑149 (MQ=255) ccaccagtcctcggggaccggcgctgacacgacgctgtcggcatcctggcgcagcgggccgttcaggtcattgcgttgcacggccgcatccccaggcacctcatagtcgggccccaccatcatgcaggcccccagcgacaggcacag                                                                                                                                                  >  4:149027‑M1/147‑147 (MQ=255)  caccagtcctcggggaccggcgctgacacgacgctgtcggcatcctggcgcagcgggccgttcaggtcattgcgttgcacggccgcatccccaggcacctcatagtcgggccccaccatcatgcaggcccccagcgacaggcacaGGcc                                                                                                                                               >  8:256730‑M1/146‑149 (MQ=255)        cAACCTGCTGCCCAACGTCAACCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGcc                                                                                                                                         >  6:335402/1‑149 (MQ=255)           ccTGCTGCCCAACGTCAACCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCAt                                                                                                                                      <  2:43321/149‑1 (MQ=255)             tgctgcCCAACGTCAACCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATg                                                                                                                                     >  7:276337/1‑148 (MQ=255)               ctgcCCAACGTCAACCCGGCGTTCAGCTGGGTACGCCCGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGaaa                                                                                                                                  <  5:379079/149‑1 (MQ=255)                tgcCCAACGTCAACCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGCCGGTGTCGATCATCGAGGGCCAGCGCCCATGaaa                                                                                                                                  >  7:295507/1‑148 (MQ=255)                tgcCCAACGTCAACCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGaaa                                                                                                                                  >  1:28560/1‑148 (MQ=255)                  cccAACGTCAACCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACa                                                                                                                                <  6:101732/148‑1 (MQ=255)                   ccAACGTCAACCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGc                                                                                                                              <  4:53186/149‑1 (MQ=255)                         tCAACCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATcc                                                                                                                        <  5:111789/149‑1 (MQ=255)                           aaCCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCctg                                                                                                                      <  1:41997/149‑1 (MQ=255)                           aaCCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCctg                                                                                                                      <  8:63290/149‑1 (MQ=255)                           aaCCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCACATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGAGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCctg                                                                                                                      >  8:26477/1‑149 (MQ=255)                            aCCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCctgg                                                                                                                     >  3:210792/1‑149 (MQ=255)                               cGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCctggctg                                                                                                                  <  8:276337/149‑1 (MQ=255)                                 gCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCctggctgg                                                                                                                 >  6:320168/1‑148 (MQ=255)                                     tCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgt                                                                                                            >  1:193312/1‑149 (MQ=255)                                      tcggcatcctggcgcagcgggccgttcaggtcattgcgttgcacggccgcatccccaggcacctcatagtcgggccccaccatcatgcaggcccccatcgacaggcacaGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctg                                                                                                             >  5:378657‑M1/110‑147 (MQ=255)                                      cAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgt                                                                                                            <  1:208539/148‑1 (MQ=255)                                       aGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgtgc                                                                                                          <  2:28560/149‑1 (MQ=255)                                        ggcatcctggcgcagcgggccgttcaggtcattgcgttgcacggccgcatccccaggcacctcatagtcgggccccaccatcatgcaggcccccagcgacaggcacaGGCCa                                                                                                                                              <  1:258023‑M1/5‑1 (MQ=255)                                        ggcatcctggcgcagcgggccgttcaggtcattgcgttgcacggccgcatccccaggcacctcatagtcgggccccaccatcatgcaggcccccagcgacaggcacaGGCCa                                                                                                                                              >  2:258023‑M1/108‑112 (MQ=255)                                         cTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgtgcct                                                                                                        >  3:54981/1‑149 (MQ=255)                                            ggTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgtgcctgt                                                                                                      <  4:54981/148‑1 (MQ=255)                                             gTACGCCTGGCCAAGCGCATTCCGGTGAGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGCGCGTACTGCGAAGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCAGATCCTGGCTGgcctgtgcatgtag                                                                                                    >  8:349151/1‑147 (MQ=255)                                                cGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTg                                                                                                 >  8:338864/1‑149 (MQ=255)                                                  ccTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGCCGTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCAGGAAACCGCTGAGGCTGGCTGGCCTGTGCCGGGCGCTggg                                                                                               >  8:78209/1‑149 (MQ=255)                                                   cTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCATGACTTCCGCATGATCGCCGTGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAATCTGCTGAACCTGGCTGGCCTGTGCCTGTCGCTgggg                                                                                              <  4:224463/149‑1 (MQ=255)                                                   cTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTgggg                                                                                              <  2:296144/149‑1 (MQ=255)                                                       cccAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCt                                                                                          <  5:335402/149‑1 (MQ=255)                                                         cAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTg                                                                                         >  5:228378/1‑148 (MQ=255)                                                              cATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCatgat                                                                                   <  4:314872/149‑1 (MQ=255)                                                               aTTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGAGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCatgatg                                                                                  >  6:232885/1‑149 (MQ=255)                                                                   cGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTgg                                                                                                >  1:14741/1‑131 (MQ=255)                                                                   cGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTgg                                                                                                <  2:14741/131‑1 (MQ=255)                                                                    ggTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTggg                                                                             <  7:338864/149‑1 (MQ=255)                                                                    ggTGAGCATCGGCGTTGACGAAGGGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTTCGAGGGGGTCGTTCATCGATGTCCAGCGCCCATGACACAGCTGATCCTGGCGGGCCTGTGCCTGTCGCTGGGGGCCTTCATGATGGTggg                                                                             <  7:160604/149‑1 (MQ=255)                                                                     gTGGGCATGGCCTTTGACTAAGTGCCGCAAGACTTCAGCATGATCGCCGGGGGTACTGCGAGGGTGTCGATGATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTgggt                                                                            <  4:244346/149‑2 (MQ=255)                                                                        cgcATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGccc                                                                         <  8:295507/149‑1 (MQ=255)                                                                        cgcATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGcc                                                                          <  5:320168/148‑1 (MQ=255)                                                                           gttgcacggccgcatccccaggcacctcatagtcgggccccaccatcatgcaggcccccagcgacaggcacaGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgtgcctgt                                                                                                      >  8:203516‑M1/73‑117 (MQ=255)                                                                           gttgcacggccgcatccccaggcacctcatagtcgggccccaccatcatgcaggcccccagcgacaggcacaGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGgcctgtgcctgt                                                                                                      <  7:203516‑M1/45‑1 (MQ=255)                                                                                cTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGa                                                                 <  6:228378/149‑1 (MQ=255)                                                                                cTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGa                                                                 <  2:193312/149‑1 (MQ=255)                                                                                               gCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGc                                                  >  4:134513/1‑149 (MQ=255)                                                                                                     cTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGt                                            <  2:341067/149‑1 (MQ=255)                                                                                                           cATGATCGCCGGGCGTACTGCGCCGGTGTCGATCTTCGAGGGCCTGCGCCCATGAAACAGGTGATCCTGGCTGGCCTTTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGATTATGTGGTGCCTGGGGATGCGGCCGTGCAACg                                      <  7:235994/149‑1 (MQ=255)                                                                                                           cATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACg                                      <  3:134513/149‑1 (MQ=255)                                                                                                              gATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCaa                                   >  3:183578/1‑149 (MQ=255)                                                                                                                tCGCCCGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAAt                                  >  1:344409/1‑148 (MQ=255)                                                                                                                               cGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGc                  >  7:324197/1‑149 (MQ=255)                                                                                                                               cGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGc                  >  3:22112/1‑149 (MQ=255)                                                                                                                                          atcatcGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGa                                                                       >  2:165050/1‑85 (MQ=255)                                                                                                                                             atcGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGcc    >  4:160748/1‑149 (MQ=255)                                                                                                                                             atcGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCGGTGCCGGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGc     <  7:78209/148‑1 (MQ=255)                                                                                                                                                 aGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGa  >  8:147519/1‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                 GTGGCGCCAACCTGCTGCCCAACGTCAACCCGGCGTTCAGCTGGGTACGCCTGGCCCAGCGCATTCCGGTGCGCATCGCCTTTGACGAAGTGCCGCAAGACTTCCGCATGATCGCCGGGCGTACTGCGACGGTGTCGATCATCGAGGGCCAGCGCCCATGAAACAGCTGATCCTGGCTGGCCTGTGCCTGTCGCTGGGGGCCTGCATGATGGTGGGGCCCGACTATGAGGTGCCTGGGGATGCGGCCGTGCAACGCAATGACCTGAACGGCCCGCTGCGCCAGGATGCCGA  >  NC_002947/230183‑230473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.