New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 400371	25 (0.420)	4 (0.070)	4/250	NT	9.8%	intergenic (+106/‑44)	PP_0333/PP_0334	hypothetical protein/transposase
	?	NC_002947	= 3967872	49 (0.860)					intergenic (+64/‑1)	ydcP/PP_3498	peptidase/transposase

TCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/400222‑400371 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatCGATTACACCTGATCGGGGTGGACACACATCGGTTTAGCGGCCAAGAGGCCCTGCCCGGCGAACTCAGTGCGGTCCGCGTGGGATGGTCTTGAGCAAGTCTTCGGGGCTGATATGCCCCACCACCTGGGCCACCGCGCTGCCCGGGG  <  NC_002947/3967872‑3967726                                                                                                                                                                                                                                                                                                           TCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCA                                                                                                                                                      <  4:268031/149‑1   AACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCAT                                                                                                                                                     >  1:191860/1‑148   AACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCAT                                                                                                                                                     >  2:208745/1‑148                                                                         GATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATCGATTACACCTGATCGGGGTGGACACACATCGGTTTAGCGGCCAAGAGGCCCTGCCCGGCGAACTCAGTGC                                                                              >  7:80880/1‑149                                                                          ATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATCGATTACACCTGATCGGGGTGGACACACATCGGTTTAGCGGCCAAGAGGCCCTGCCCGGCGAACTCAGTGCG                                                                             >  5:87780/1‑149                                                                                             GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATCGATTACACCTGATCGGGGTGGACACACATCGGTTTAGCGGCCAAGAGGCCCTGCCCGGCGAACTCAGTGCGGTCCGCGTGGGATGGTCTT                                                          <  8:80880/149‑1                                                                                                                                  CGGCAGCGAGGGCGAGACCATCGATTACACCTGATCGGGGTGGACACACATCGGTTTAGCGGCCAAGAGGCCCTGCCCGGCGAACTCAGTGCGGTCCGCGTGGGATGGTCTTGAGCAAGTCTTCGGGGCTGATATGCCCCACCACCTGG                     <  6:87780/149‑1                                                                                                                                                     ATCGATTACACCTGATCGGGGTGGACACACATCGGTTTAGCGGCCAAGAGGCCCTGCCCGGCGAACTCAGTGCGGTCCGCGTGGGATGGTCTTGAGCAAGTCTTCGGGGCTGATATGCCCCACCACCTGGGCCACCGCGCTGCCCGGGG  >  5:142373/1‑149                                                                                                                                                     ATCGATTACACCTGATCGGGGTGGACACACATCGGTTTAGCGGCCAAGAGGCCCTGCCCGGCGAACTCAGTGCGGTCCGCGTGGGATGGTCTTGAGCAAGTCTTCGGGGCTGATATGCCCCACCACCTGGGCCACCGCGCTGCCCGGGG  >  7:253854/1‑149                                                                                                                                                                                                                                                                                                           TCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/400222‑400371 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatCGATTACACCTGATCGGGGTGGACACACATCGGTTTAGCGGCCAAGAGGCCCTGCCCGGCGAACTCAGTGCGGTCCGCGTGGGATGGTCTTGAGCAAGTCTTCGGGGCTGATATGCCCCACCACCTGGGCCACCGCGCTGCCCGGGG  <  NC_002947/3967872‑3967726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.