New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 400371	25 (0.420)	4 (0.070)	4/250	NT	9.8%	intergenic (+106/‑44)	PP_0333/PP_0334	hypothetical protein/transposase
	?	NC_002947	= 3967872	49 (0.860)					intergenic (+64/‑1)	ydcP/PP_3498	peptidase/transposase

CCCCGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCA  >  NC_002947/3967726‑3968011                                                                                                                                                   |                                                                                                                                            ccccGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGat                                                                                                                                           >  7:253854‑M2/1‑147 (MQ=255) ccccGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGat                                                                                                                                           >  5:142373‑M2/1‑147 (MQ=255)      ggCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCATGTGTAATCGATGGACt                                                                                                                                      <  5:272566/149‑1 (MQ=255)                    ccAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGatggtctcgccctcgctgccg                                                                                                                        <  6:87780‑M2/149‑22 (MQ=255)                    ccAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAgg                                                                                                                        <  2:248651/149‑1 (MQ=255)                                      cAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACggtg                                                                                                      >  1:235094/1‑149 (MQ=255)                                        gCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACggtggt                                                                                                    >  6:345119/1‑149 (MQ=255)                                        gCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACggtggt                                                                                                    <  2:235094/149‑1 (MQ=255)                                          cccGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGgtgt                                                                                                  >  4:358432/1‑149 (MQ=255)                                           ccGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGtt                                                                                                 >  5:114688/1‑149 (MQ=255)                                                 aCTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCgaag                                                                                            >  4:263216/1‑148 (MQ=255)                                                         aaGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGatggtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcc                                                                                   <  8:80880‑M2/149‑59 (MQ=255)                                                         aaGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCaa                                                                                     <  5:345119/147‑1 (MQ=255)                                                           gACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGc                                                                                 <  5:152660/149‑1 (MQ=255)                                                                   cACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGACACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAggg                                                                         >  8:311377/1‑149 (MQ=255)                                                                         gACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAc                                                                   <  4:93363/149‑1 (MQ=255)                                                                            cGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGatggtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtccat                                                                >  5:87780‑M2/1‑72 (MQ=255)                                                                             gCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGatggtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtccatc                                                               >  7:80880‑M2/1‑71 (MQ=255)                                                                              cACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATg                                                               >  2:42241/1‑148 (MQ=255)                                                                               aCTGAGTTCGCCGGTCAGGGCCTCTTGGCCGATAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGACACCGCAGAGGCATCACAGTGCCACGGTGGTGTTCGAAGCAGCCAACGGCAGCGAGGGCGATACCATGa                                                              >  8:10672/1‑148 (MQ=21)                                                                               aCTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCAt                                                                <  8:207465/146‑1 (MQ=255)                                                                               aCTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCAt                                                                >  7:207465/1‑146 (MQ=255)                                                                               aCTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGa                                                              >  5:379477/1‑148 (MQ=255)                                                                               aCTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGa                                                              >  5:172527/1‑148 (MQ=255)                                                                                   aGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAg                                                         >  3:210059/1‑149 (MQ=255)                                                                                     ttCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCa                                                       >  7:215321/1‑149 (MQ=255)                                                                                     ttCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCa                                                       >  7:209771/1‑149 (MQ=255)                                                                                        gCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTATGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAg                                                    >  1:48083/1‑149 (MQ=255)                                                                                           gggCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTc                                                 <  3:263216/149‑1 (MQ=255)                                                                                             gCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAg                                                                           <  2:193321/121‑1 (MQ=255)                                                                                             gCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAg                                                                           >  1:193321/1‑121 (MQ=255)                                                                                                 ggCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCgaa                                                                                             <  1:285364/99‑1 (MQ=255)                                                                                                 ggCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCgaa                                                                                             >  2:285364/1‑99 (MQ=255)                                                                                                 ggCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAaca                                           >  4:2972/1‑149 (MQ=255)                                                                                                  gCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAacac                                          >  7:221371/1‑149 (MQ=255)                                                                                                    ctctTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGa                                        >  4:91369/1‑149 (MQ=255)                                                                                                       ttGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTc                                     >  1:337794/1‑149 (MQ=255)                                                                                                          gCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACTGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCt                                  <  7:311377/149‑1 (MQ=255)                                                                                                             gCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTc                               <  6:172527/149‑1 (MQ=255)                                                                                                                   ccGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCAc                         <  1:42241/149‑1 (MQ=255)                                                                                                                      aTGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGa                      >  7:188625/1‑149 (MQ=255)                                                                                                                       tgtgtgTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGAt                     <  4:210059/149‑1 (MQ=255)                                                                                                                         tgtgtCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGAtgt                   <  3:2972/149‑1 (MQ=255)                                                                                                                           tgtCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGAtgtg                  <  6:114688/148‑1 (MQ=255)                                                                                                                            gtCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCgaga                                                                    <  4:51454/97‑1 (MQ=255)                                                                                                                            gtCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCgaga                                                                    >  3:51454/1‑97 (MQ=255)                                                                                                                               cACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCt             >  8:153690/1‑149 (MQ=40)                                                                                                                               cACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCt             <  8:221371/149‑1 (MQ=40)                                                                                                                                  cccGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGATAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTg          >  4:14851/1‑149 (MQ=38)                                                                                                                                  cccGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTg          <  3:358432/149‑1 (MQ=38)                                                                                                                                   ccGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGc         <  8:188625/149‑1 (MQ=37)                                                                                                                                   ccGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGc         <  7:150371/149‑1 (MQ=37)                                                                                                                                         aGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAAcc   <  2:337794/149‑1 (MQ=32)                                                                                                                                          ggTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGtt                                                                                                 >  5:343961/1‑54 (MQ=33)                                                                                                                                          ggTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGtt                                                                                                 <  6:343961/54‑1 (MQ=33)                                                                                                                                          ggTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCa  >  2:115483/1‑149 (MQ=31)                                                                                                                                                   |                                                                                                                                            CCCCGGGCAGCGCGGTGGCCCAGGTGGTGGGGCATATCAGCCCCGAAGACTTGCTCAAGACCATCCCACGCGGACCGCACTGAGTTCGCCGGGCAGGGCCTCTTGGCCGCTAAACCGATGTGTGTCCACCCCGATCAGGTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCA  >  NC_002947/3967726‑3968011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.