New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 400371	25 (0.420)	4 (0.070)	4/250	NT	9.8%	intergenic (+106/‑44)	PP_0333/PP_0334	hypothetical protein/transposase
	?	NC_002947	= 3967872	49 (0.860)					intergenic (+64/‑1)	ydcP/PP_3498	peptidase/transposase

AACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTGGTCGGGTGATCTACGAAGATCGCATCAAATC  >  NC_002947/400224‑400518                                                                                                                                                    |                                                                                                                                                    aaCCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCAT                                                                                                                                                     >  1:191860‑M1/1‑148 (MQ=255) aaCCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCAT                                                                                                                                                     >  2:208745‑M1/1‑148 (MQ=255)   cccGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGa                                                                                                                                                   >  5:257106/1‑148 (MQ=255)      ggCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCTACGGCAGCGAGGGCGAGACCATGaaaaa                                                                                                                                               <  1:208745/149‑1 (MQ=255)         gaagaaGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCa                                                                                                                                            >  7:107606/1‑149 (MQ=255)         gaagaaGTTCACTGCTGGCAAGCCAGGGTGCTGAGCTGAAGCGTGCGCCATACAATGTAATCGATTGACTCTCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAATCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCa                                                                                                                                            <  5:228385/149‑1 (MQ=255)                ttCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCg                                                                                                                                     <  2:191860/149‑1 (MQ=255)                  cACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGa                                                                                                                                    >  3:130305/1‑148 (MQ=255)                   aCTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACAATGAAAAAGCATAGTTCGaaa                                                                                                                                  >  1:88398/1‑149 (MQ=255)                     tgctgGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAaca                                                                                                                                >  2:73813/1‑149 (MQ=255)                          gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGAtt                                                                                                                           >  8:140312/1‑149 (MQ=255)                           cAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTc                                                                                                                          >  8:220822/1‑149 (MQ=255)                            aaGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTcc                                                                                                                         <  3:215874/149‑1 (MQ=255)                            aaGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTcc                                                                                                                         >  1:267641/1‑149 (MQ=255)                              gCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCt                                                                                                                       <  3:173042/149‑1 (MQ=255)                               ccAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCt                                                                                                                       <  6:257106/148‑1 (MQ=255)                                cAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGt                                                                                                                     >  5:260957/1‑149 (MQ=255)                                  gggTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCt                                                                                                                   >  3:198649/1‑149 (MQ=255)                                       cTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCa                                                                                                               <  1:73813/148‑1 (MQ=255)                                       cTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCAc                                                                                                              <  8:215172/149‑1 (MQ=255)                                        tGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACt                                                                                                             >  4:114451/1‑149 (MQ=255)                                         gATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGCTGTTCGAAGAAGCAAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTCTCTTCCACt                                                                                                             >  1:333274/1‑148 (MQ=255)                                              gAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGAtgtg                                                                                                       >  1:135216/1‑149 (MQ=255)                                                aGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGa                                                                                                     <  2:243924/149‑1 (MQ=255)                                                      cgcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt                                                                                                <  4:65862/148‑1 (MQ=38)                                                      cgcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt                                                                                                <  4:198649/148‑1 (MQ=38)                                                              aaTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTg                                                                                               <  7:180222/141‑1 (MQ=31)                                                              aaTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTg                                                                                               >  8:180222/1‑141 (MQ=31)                                                                       gATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgc                                                                              >  7:80880‑M1/1‑78 (MQ=255)                                                                        aTGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcg                                                                             >  5:87780‑M1/1‑77 (MQ=255)                                                                                           ggCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcggtccgcgtgggatggtctt                                                          <  8:80880‑M1/149‑92 (MQ=255)                                                                                                                                cGGCAGCGAGGGCGAGACCATcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcggtccgcgtgggatggtcttgagcaagtcttcggggctgatatgccccaccacctgg                     <  6:87780‑M1/149‑129 (MQ=255)                                                                                                                                                   aTcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcggtccgcgtgggatggtcttgagcaagtcttcggggctgatatgccccaccacctgggccaccgcgctgcccgggg  >  7:253854‑M1/1‑2 (MQ=255)                                                                                                                                                   aTcgattacacctgatcggggtggacacacatcggtttagcggccaagaggccctgcccggcgaactcagtgcggtccgcgtgggatggtcttgagcaagtcttcggggctgatatgccccaccacctgggccaccgcgctgcccgggg  >  5:142373‑M1/1‑2 (MQ=255)                                                                                                                                                    |                                                                                                                                                    AACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTGGTCGGGTGATCTACGAAGATCGCATCAAATC  >  NC_002947/400224‑400518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.