New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 738808	30 (0.510)	4 (0.070)	3/248	NT	9.5%	coding (608/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	= 738852	47 (0.830)					coding (564/867 nt)	pilD	leader peptidase/N‑methyltransferase

GGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/738657‑738808 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGT  <  NC_002947/738852‑738706                                                                                                                                                                                                                                                                                                              GGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACCCCCCGATAAGCGCAATCAGCTGGAAAACTCCATAGACCCAGCCGTCATTGC                                                                                                                                                        >  8:354299/1‑149                                                     GACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCCTCGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGG                                                                                                     >  1:76512/1‑149                                                       CGACAACAGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAA                                                                                                  <  2:76512/149‑1                                                              AGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAA                                                                                                  <  5:328472/142‑1                                                              AGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAA                                                                                                  >  6:328472/1‑142                                                                                                                                                        GGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGT  <  3:216434/149‑1                                                                                                                                                                                                                                                                                                              GGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/738657‑738808 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGT  <  NC_002947/738852‑738706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.