New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 738808	30 (0.510)	4 (0.070)	3/248	NT	9.5%	coding (608/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	= 738852	47 (0.830)					coding (564/867 nt)	pilD	leader peptidase/N‑methyltransferase

CCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAG  >  NC_002947/738663‑738956                                                                                                                                                   |                                                                                                                                                     ccGGCTAAAACGCAGCAGGCACAGGCCAAACAGAGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTg                                                                                                                                                    <  7:354299/148‑1 (MQ=255)                               cAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACTGCAGCACCTGCCAA‑CGCCCCCACGCCCCGATCAGCTCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGAGCAGCCTGAACACCCAGTACACCGTCcaca                                                                                                                     <  5:370300/149‑1 (MQ=255)                                     ccccACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCt                                                                                                                 >  3:70486/1‑147 (MQ=255)                                      cccACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAg                                                                                                              <  4:70486/149‑1 (MQ=255)                                            aCCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACcc                                                                                                        <  3:216434‑M2/149‑3 (MQ=255)                                               gacgacAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCCTCGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGgtacctcagcctgtggacggtgtactgggtgttcaggctggtcaccgg                                                                                                      >  1:76512‑M1/1‑101 (MQ=255)                                                 cgacAACAGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGgtacctcagcctgtggacggtgtactgggtgttcaggctggtcaccggcaa                                                                                                   <  2:76512‑M1/149‑52 (MQ=255)                                                    caacaGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCCCGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTg                                                                                                >  3:211309/1‑149 (MQ=255)                                                        agcagcGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGgtacctcagcctgtggacggtgtactgggtgttcaggctggtcaccggcaa                                                                                                   >  6:328472‑M1/1‑91 (MQ=255)                                                        agcagcGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGgtacctcagcctgtggacggtgtactgggtgttcaggctggtcaccggcaa                                                                                                   <  5:328472‑M1/142‑52 (MQ=255)                                                              gTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAg                                                                                      <  3:174397/149‑1 (MQ=255)                                                              gTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAg                                                                                      >  6:131249/1‑149 (MQ=255)                                                               tCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGt                                                                                     <  4:216434/149‑1 (MQ=255)                                                                         caCCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCCGTGACCACCCTGAACACCCAGTACACCGTCCACAGGATGAGGTACCCGGCCACAGCGCCACACAGTGCGTCGGc                                                                             >  8:319833/1‑147 (MQ=255)                                                                          aCCTTCCAA‑CCCCACCACGCCCCGATCCGCGGCCTCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAg                                                                          <  3:273721/149‑1 (MQ=255)                                                                             tGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAgggg                                                                       >  6:278583/1‑149 (MQ=255)                                                                                cAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGcac                                                                    <  5:278583/149‑1 (MQ=255)                                                                                      cccccACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAgg                                                                         <  3:307059/139‑1 (MQ=255)                                                                                      cccccACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAgg                                                                         >  4:307059/1‑139 (MQ=255)                                                                                       ccccACGCCCCGATCAGCGCCATCAGCTTGATATCGCCATAGCGCATGCCTTCCTTGACGGTGACCTGCCTGAACACCCAGTACACCGTCCTGTGGCTGAGTTTCCCGGCCTCTGCGGGCCACAGTGCTTCGGCCAGTGGCACTTggtt                                                              <  5:178599/149‑3 (MQ=255)                                                                                        cccACGCCCCGATCAGCGCCATCAGCTTGAAATGGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCGTGGGCACATGGATg                                                             <  7:319833/149‑1 (MQ=255)                                                                                        cccACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCAgatggatg                                                             >  4:4775/1‑149 (MQ=255)                                                                                               cccGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAgg                                                      >  7:86481/1‑149 (MQ=255)                                                                                                   aTCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCAtt                                                  >  8:160496/1‑149 (MQ=255)                                                                                                        cgcCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGACAGGGCCACATGGATGCCAAAGGCATTGACGa                                             >  6:263511/1‑149 (MQ=255)                                                                                                         gcCATCAGCTTGAAATCGCCATAGCGCATGCCTTCCTTGCCGGTGACCAGCCTTAACACCCAGTACACCGTCCACTGTCTGATGTACCCGGCCACTGCGCCCCACATTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACgtt                                            <  5:263511/149‑3 (MQ=255)                                                                                                                 cTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTa                                    <  4:211309/149‑1 (MQ=255)                                                                                                                  ttGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAg                                   >  7:39211/1‑149 (MQ=255)                                                                                                                        tCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGt                                                                                     <  7:345745/93‑1 (MQ=255)                                                                                                                        tCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGt                                                                                     >  8:345745/1‑93 (MQ=255)                                                                                                                                 cccATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGgcag                    >  1:172959/1‑149 (MQ=255)                                                                                                                                  ccATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGgcag                    >  1:331620/1‑148 (MQ=255)                                                                                                                                   cATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGc                                                     <  6:331063/114‑1 (MQ=255)                                                                                                                                   cATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGc                                                     >  5:331063/1‑114 (MQ=255)                                                                                                                                       ccttccttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcacca               <  8:86481/148‑1 (MQ=255)                                                                                                                                        cttccttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcaccag              >  4:177445/1‑148 (MQ=255)                                                                                                                                             ttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACccggcaaggaaggcatgggctatggcgatttcaagctgatggcgctgatcggggcgtgggggggttggcaggtgctgccgttgacgctgctgttgtcg        <  2:76512‑M2/149‑99 (MQ=255)                                                                                                                                             ttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACccggcaaggaaggcatgggctatggcgatttcaagctgatggcgctgatcggggcgtgggggggttggcaggtgctgccgttgacgctgct               >  6:328472‑M2/1‑51 (MQ=255)                                                                                                                                             ttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACccggcaaggaaggcatgggctatggcgatttcaagctgatggcgctgatcggggcgtgggggggttggcaggtgctgccgttgacgctgct               <  5:328472‑M2/142‑92 (MQ=255)                                                                                                                                                ccGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACccggcaaggaaggcatgggctatggcgatttcaagctgatggcgctgatcggggcgaggggggggttggcaggtgctgccgttgacgctgctgttgtcgtc     >  1:76512‑M2/1‑48 (MQ=255)                                                                                                                                                 cGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGgc    <  5:131249/149‑1 (MQ=255)                                                                                                                                                  gggtacctcagcctgtggacggtgtactgggtgttcaggctggtcaccggcaaggaaggcatgggctatggcgatttcaagctgatggcgctgatcggggcgtgggggggttggcaggtgctgccgttgacgctgctgttgtcgtcggt   <  3:216434‑M1/149‑148 (MQ=255)                                                                                                                                                   gTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGgcag  <  7:160496/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAA‑CCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAG  >  NC_002947/738663‑738956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.