New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 738808	30 (0.510)	4 (0.070)	3/248	NT	9.5%	coding (608/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	= 738852	47 (0.830)					coding (564/867 nt)	pilD	leader peptidase/N‑methyltransferase

ACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAG  >  NC_002947/738706‑738992                                                                                                                                                   |                                                                                                                                             aCCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACcc                                                                                                                                            <  3:216434‑M2/149‑3 (MQ=255)         caacaGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCCCGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTg                                                                                                                                    >  3:211309/1‑149 (MQ=255)                   gTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAg                                                                                                                          >  6:131249/1‑149 (MQ=255)                   gTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAg                                                                                                                          <  3:174397/149‑1 (MQ=255)                    tCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGt                                                                                                                         <  4:216434/149‑1 (MQ=255)                              caCCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCCGTGACCACCCTGAACACCCAGTACACCGTCCACAGGATGAGGTACCCGGCCACAGCGCCACACAGTGCGTCGGc                                                                                                                 >  8:319833/1‑147 (MQ=255)                               aCCTTCCAACCCCACCACGCCCCGATCCGCGGCCTCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAg                                                                                                              <  3:273721/149‑1 (MQ=255)                                  tGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAgggg                                                                                                           >  6:278583/1‑149 (MQ=255)                                     cAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGcac                                                                                                        <  5:278583/149‑1 (MQ=255)                                          cccccACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAgg                                                                                                             >  4:307059/1‑139 (MQ=255)                                          cccccACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAgg                                                                                                             <  3:307059/139‑1 (MQ=255)                                           ccccACGCCCCGATCAGCGCCATCAGCTTGATATCGCCATAGCGCATGCCTTCCTTGACGGTGACCTGCCTGAACACCCAGTACACCGTCCTGTGGCTGAGTTTCCCGGCCTCTGCGGGCCACAGTGCTTCGGCCAGTGGCACTTggtt                                                                                                  <  5:178599/149‑3 (MQ=255)                                            cccACGCCCCGATCAGCGCCATCAGCTTGAAATGGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCGTGGGCACATGGATg                                                                                                 <  7:319833/149‑1 (MQ=255)                                            cccACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCAgatggatg                                                                                                 >  4:4775/1‑149 (MQ=255)                                                   cccGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAgg                                                                                          >  7:86481/1‑149 (MQ=255)                                                       aTCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCAtt                                                                                      >  8:160496/1‑149 (MQ=255)                                                            cgcCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGACAGGGCCACATGGATGCCAAAGGCATTGACGa                                                                                 >  6:263511/1‑149 (MQ=255)                                                             gcCATCAGCTTGAAATCGCCATAGCGCATGCCTTCCTTGCCGGTGACCAGCCTTAACACCCAGTACACCGTCCACTGTCTGATGTACCCGGCCACTGCGCCCCACATTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACgtt                                                                                <  5:263511/149‑3 (MQ=255)                                                                     cTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTa                                                                        <  4:211309/149‑1 (MQ=255)                                                                      ttGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAg                                                                       >  7:39211/1‑149 (MQ=255)                                                                            tCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGt                                                                                                                         <  7:345745/93‑1 (MQ=255)                                                                            tCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGt                                                                                                                         >  8:345745/1‑93 (MQ=255)                                                                                     cccATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGgcag                                                        >  1:172959/1‑149 (MQ=255)                                                                                      ccATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGgcag                                                        >  1:331620/1‑148 (MQ=255)                                                                                       cATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGc                                                                                         <  6:331063/114‑1 (MQ=255)                                                                                       cATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGc                                                                                         >  5:331063/1‑114 (MQ=255)                                                                                           ccttccttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcacca                                                   <  8:86481/148‑1 (MQ=255)                                                                                            cttccttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGcagcaccag                                                  >  4:177445/1‑148 (MQ=255)                                                                                                 ttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACccggcaaggaaggcatgggctatggcgatttcaagctgatggcgctgatcggggcgtgggggggttggcaggtgctgccgttgacgctgctgttgtcg                                            <  2:76512‑M2/149‑99 (MQ=255)                                                                                                 ttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACccggcaaggaaggcatgggctatggcgatttcaagctgatggcgctgatcggggcgtgggggggttggcaggtgctgccgttgacgctgct                                                   <  5:328472‑M2/142‑92 (MQ=255)                                                                                                 ttGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACccggcaaggaaggcatgggctatggcgatttcaagctgatggcgctgatcggggcgtgggggggttggcaggtgctgccgttgacgctgct                                                   >  6:328472‑M2/1‑51 (MQ=255)                                                                                                    ccGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACccggcaaggaaggcatgggctatggcgatttcaagctgatggcgctgatcggggcgaggggggggttggcaggtgctgccgttgacgctgctgttgtcgtc                                         >  1:76512‑M2/1‑48 (MQ=255)                                                                                                     cGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGgc                                        <  5:131249/149‑1 (MQ=255)                                                                                                       gTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGgcag                                      <  7:160496/149‑1 (MQ=255)                                                                                                            cAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAACCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGcagcag                                   >  3:200330/1‑147 (MQ=255)                                                                                                              gCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGTGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCg                                          <  8:294544/138‑1 (MQ=255)                                                                                                              gCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCg                                          >  7:294544/1‑138 (MQ=255)                                                                                                               ccTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggt                              >  7:167259/1‑149 (MQ=255)                                                                                                                cTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCtggtg                             <  2:172959/149‑1 (MQ=255)                                                                                                                  gAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACCGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATcc                                           <  4:338316/133‑1 (MQ=255)                                                                                                                  gAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATcc                                           >  3:338316/1‑133 (MQ=255)                                                                                                                   aaCACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTc                          <  8:39211/149‑1 (MQ=255)                                                                                                                    acccccAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCCCATGCGGCAGCAGCTGGTGGGcc                         >  6:236251/4‑149 (MQ=255)                                                                                                                     cacCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCg                        >  6:130407/1‑149 (MQ=255)                                                                                                                        ccAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCAt                     >  5:141586/1‑149 (MQ=255)                                                                                                                        ccAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCAt                     >  8:199229/1‑149 (MQ=255)                                                                                                                            tACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGa                  >  4:187296/1‑148 (MQ=255)                                                                                                                               acCGTCCACAGCCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTCACGAACAGCCCTAGCCACAAGGTCGGCAGCACCAGCACATCCGGCAGCACCTGGAGGTCTGCAACGAACAg              >  2:176254/1‑149 (MQ=255)                                                                                                                                      acaGGCTGAGGTACCCGGCCACTGCGCCGCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGGTGGTGGTCTGCATCGATCAGGCTCAgc       <  1:176254/149‑1 (MQ=255)                                                                                                                                      acaGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAgc       <  1:144972/149‑1 (MQ=255)                                                                                                                                          gCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAgcgc     >  3:170184/1‑147 (MQ=255)                                                                                                                                          gCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCca   <  7:199229/149‑1 (MQ=255)                                                                                                                                            tGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCcag  >  1:112284/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                             ACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGCCATAGCCCATGCCTTCCTTGCCGGTGACCAGCCTGAACACCCAGTACACCGTCCACAGGCTGAGGTACCCGGCCACTGCGCCCCACAGTGCGTCGGCCAGGGGCACATGGATGCCAAAGGCATTGACGATCAGCCCTAGCCACATGGTCGGCAGCACCAGCACATCCGGCAGCAGCTGGTGGTCCGCATCGATCAGGCTCAGCGCCAG  >  NC_002947/738706‑738992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.