New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 889027	46 (0.780)	3 (0.050)	3/248	NT	6.4%	coding (457/693 nt)	PP_0769	sensor histidine kinase
	?	NC_002947	= 889058	44 (0.780)					coding (488/693 nt)	PP_0769	sensor histidine kinase

AGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/888875‑889027 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgTCATCGTTGACGCAAATGGCCAACTGGTTGTCGGCCTCTT  <  NC_002947/889058‑889019                                                                                                                                                                                                   AGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAG                                              >  5:92749/1‑149   CACAACGACATTCTCGCCACTTGGCGCATCAACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACACGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGC                                            >  4:138280/1‑149    ACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCC                                           <  5:203289/149‑1                                         CAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGTCATCGTTGACGCAAATGGCCAACTGGTTGTCGGCC      <  3:249533/149‑1                                                                 CGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCACTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGC                                            <  1:140905/87‑1                                                                 CGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCACTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGC                                            <  1:146085/87‑1                                                                 CGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCACTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGC                                            >  2:140905/1‑87                                                                 CGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCACTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGC                                            >  2:146085/1‑87                                                                                                           CACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGTCATCGTTGACGCAAATGGCCAACTGGTTGTCGGCCTCTT  >  3:58976/1‑87                                                                                                           CACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGTCATCGTTGACGCAAATGGCCAACTGGTTGTCGGCCTCTT  <  4:58976/87‑1                                                                                                                                                                                                   AGCACAACGACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/888875‑889027 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgTCATCGTTGACGCAAATGGCCAACTGGTTGTCGGCCTCTT  <  NC_002947/889058‑889019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.