| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 889027 | 46 (0.780) | 3 (0.050) | 3/248 | NT | 6.4% | coding (457/693 nt) | PP_0769 | sensor histidine kinase |
| ? | NC_002947 | = 889058 | 44 (0.780) | coding (488/693 nt) | PP_0769 | sensor histidine kinase | |||||
GACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGC > NC_002947/888883‑889172 | gACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACaa < 3:224624/149‑1 (MQ=255) aTTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCa < 6:92749/149‑1 (MQ=255) tcGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAAc > 8:122501/1‑143 (MQ=255) tcGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAAc < 7:122501/143‑1 (MQ=255) gCCACTTGGCTCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGTCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTgg < 5:190762/148‑1 (MQ=255) gCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTgg < 6:220098/148‑1 (MQ=255) aCTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCAt < 3:267151/149‑1 (MQ=255) gcgcATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGc < 5:235292/148‑1 (MQ=255) acCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGa > 2:74390/1‑149 (MQ=255) aCAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAg > 1:202537/1‑122 (MQ=255) aCAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAg < 2:202537/122‑1 (MQ=255) cAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGtcatcgttgacgcaaatggccaactggttgtcggcc < 3:249533‑M1/149‑37 (MQ=255) tcttcGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCaaa < 6:127097/148‑1 (MQ=255) ttcGACCGCGAACTGGTGGCCTCTGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATc > 2:165847/1‑142 (MQ=255) ttcGACCGCGAACTGGTGGCCTCTGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATc < 1:165847/142‑1 (MQ=255) ttcGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGca > 4:313262/1‑149 (MQ=255) gAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTc > 7:297012/1‑147 (MQ=255) gAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGa < 3:138280/149‑1 (MQ=255) aaCTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAg < 3:313262/149‑1 (MQ=255) gCCTCGGTGATCGCCAACGTCATCAACAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGTCCATTTGCGTAAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCagga < 7:335872/149‑1 (MQ=255) ccTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCCACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCaggag > 8:355039/1‑149 (MQ=255) cTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCTGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATTACGGCCCggg > 7:257634/1‑117 (MQ=255) cTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCAt > 2:326483/1‑93 (MQ=255) cTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCggg < 8:257634/117‑1 (MQ=255) gTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTa < 8:154647/149‑1 (MQ=255) gCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATcc < 7:355039/148‑1 (MQ=255) gCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCa < 8:297012/149‑1 (MQ=255) ccAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCggg < 7:202634/94‑1 (MQ=255) ccAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCggg > 8:202634/1‑94 (MQ=255) aaCGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactcgac > 4:56666/1‑149 (MQ=255) cACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGtcatcgttgacgcaaatggccaactggttgtcggcctctt > 3:58976‑M1/1‑47 (MQ=255) cACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGtcatcgttgacgcaaatggccaactggttgtcggcctctt < 4:58976‑M1/87‑41 (MQ=255) aCCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCgg > 4:170393/1‑149 (MQ=255) ccGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCgg > 2:301828/1‑147 (MQ=255) gCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCGCATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCgg < 2:6727/145‑1 (MQ=255) gCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCGCATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCgg > 1:6727/1‑145 (MQ=255) gggCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGCCGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCt > 5:267891/1‑149 (MQ=255) gCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTg < 3:56666/149‑1 (MQ=255) cTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACCTCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCtat > 4:303524/1‑147 (MQ=255) gCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactc < 5:322859/117‑1 (MQ=255) gCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactc > 6:322859/1‑117 (MQ=255) gCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTa < 1:301828/147‑1 (MQ=255) aTCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgc > 7:127583/1‑149 (MQ=255) aTCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCCCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgc > 6:85038/1‑149 (MQ=255) cACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgcgg > 2:135403/1‑149 (MQ=255) ccATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgcg < 2:322293/146‑1 (MQ=255) ccATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgcg > 1:322293/1‑146 (MQ=255) cATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactcg < 6:192051/109‑1 (MQ=255) cATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactcg > 5:192051/1‑109 (MQ=255) cATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGACAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgcggcgc > 6:24063/1‑149 (MQ=255) aaGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGAcggcctcttcgatggtgatcagcaaggcgtgcccggcaaagcgggtg < 4:58976‑M2/87‑48 (MQ=255) aaGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGAcggcctcttcgatggtgatcagcaaggcgtgcccggcaaagcgggtg > 3:58976‑M2/1‑40 (MQ=255) aaGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATc > 5:187506/1‑149 (MQ=255) gagGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATcgc < 8:127583/149‑1 (MQ=255) ggCCGACAACCAGTTGGCCATTTGCGTCAACGATGAcggcctcttcgatggtgatcagcaaggcgtgcccggcaaagcgggtggcgttggtgatgacgttggcgatcaccgaggccaccagttcgcggtcgaagaaacccagcgggttg < 3:249533‑M2/149‑114 (MQ=255) gCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATcgccgc > 6:188071/1‑149 (MQ=255) gCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATcgccgc > 4:358378/1‑149 (MQ=255) | GACATTCTCGCCACTTGGCGCATCGACACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGC > NC_002947/888883‑889172 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |