New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 889027	46 (0.780)	3 (0.050)	3/248	NT	6.4%	coding (457/693 nt)	PP_0769	sensor histidine kinase
	?	NC_002947	= 889058	44 (0.780)					coding (488/693 nt)	PP_0769	sensor histidine kinase

ACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGCGTTGCATGAAAGCGGCGGCGTGCGCGGGC  >  NC_002947/888910‑889201                                                                                                                                                     |                                                                                                                                                acCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGa                                                                                                                                                 >  2:74390/1‑149 (MQ=255)                    tcttcGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCaaa                                                                                                                               <  6:127097/148‑1 (MQ=255)                      ttcGACCGCGAACTGGTGGCCTCTGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATc                                                                                                                                   <  1:165847/142‑1 (MQ=255)                      ttcGACCGCGAACTGGTGGCCTCTGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATc                                                                                                                                   >  2:165847/1‑142 (MQ=255)                      ttcGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGca                                                                                                                            >  4:313262/1‑149 (MQ=255)                               gAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTc                                                                                                                     >  7:297012/1‑147 (MQ=255)                               gAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGa                                                                                                                   <  3:138280/149‑1 (MQ=255)                                aaCTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAg                                                                                                                  <  3:313262/149‑1 (MQ=255)                                        gCCTCGGTGATCGCCAACGTCATCAACAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGTCCATTTGCGTAAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCagga                                                                                                          <  7:335872/149‑1 (MQ=255)                                         ccTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCCACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCaggag                                                                                                         >  8:355039/1‑149 (MQ=255)                                          cTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCTGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATTACGGCCCggg                                                                                                                                        >  7:257634/1‑117 (MQ=255)                                          cTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCggg                                                                                                                                        <  8:257634/117‑1 (MQ=255)                                              gTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTa                                                                                                    <  8:154647/149‑1 (MQ=255)                                                    gCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATcc                                                                                               <  7:355039/148‑1 (MQ=255)                                                    gCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCa                                                                                              <  8:297012/149‑1 (MQ=255)                                                                 ccAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCggg                                                                                                                                        >  8:202634/1‑94 (MQ=255)                                                                 ccAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCggg                                                                                                                                        <  7:202634/94‑1 (MQ=255)                                                                   aaCGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactcgac                                                                               >  4:56666/1‑149 (MQ=255)                                                                         aCCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCgg                                                                         >  4:170393/1‑149 (MQ=255)                                                                           ccGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCgg                                                                         >  2:301828/1‑147 (MQ=255)                                                                             gCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCGCATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCgg                                                                         <  2:6727/145‑1 (MQ=255)                                                                             gCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCGCATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCgg                                                                         >  1:6727/1‑145 (MQ=255)                                                                                     gggCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGCCGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCt                                                             >  5:267891/1‑149 (MQ=255)                                                                                       gCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTg                                                           <  3:56666/149‑1 (MQ=255)                                                                                             cTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACCTCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCtat                                                     >  4:303524/1‑147 (MQ=255)                                                                                                gCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactc                                                                                  <  5:322859/117‑1 (MQ=255)                                                                                                gCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactc                                                                                  >  6:322859/1‑117 (MQ=255)                                                                                                gCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTa                                                    <  1:301828/147‑1 (MQ=255)                                                                                                    aTCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgc                                              >  7:127583/1‑149 (MQ=255)                                                                                                    aTCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCCCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgc                                              >  6:85038/1‑149 (MQ=255)                                                                                                      cACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgcgg                                            >  2:135403/1‑149 (MQ=255)                                                                                                        ccATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgcg                                             <  2:322293/146‑1 (MQ=255)                                                                                                        ccATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgcg                                             >  1:322293/1‑146 (MQ=255)                                                                                                         cATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactcg                                                                                 >  5:192051/1‑109 (MQ=255)                                                                                                         cATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCAtcgactcg                                                                                 <  6:192051/109‑1 (MQ=255)                                                                                                         cATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGACAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTcgcggcgc                                         >  6:24063/1‑149 (MQ=255)                                                                                                              aaGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGAcggcctcttcgatggtgatcagcaaggcgtgcccggcaaagcgggtg                                                                                                  <  4:58976‑M2/87‑48 (MQ=255)                                                                                                              aaGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGAcggcctcttcgatggtgatcagcaaggcgtgcccggcaaagcgggtg                                                                                                  >  3:58976‑M2/1‑40 (MQ=255)                                                                                                              aaGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATc                                    >  5:187506/1‑149 (MQ=255)                                                                                                                gagGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATcgc                                  <  8:127583/149‑1 (MQ=255)                                                                                                                  ggCCGACAACCAGTTGGCCATTTGCGTCAACGATGAcggcctcttcgatggtgatcagcaaggcgtgcccggcaaagcgggtggcgttggtgatgacgttggcgatcaccgaggccaccagttcgcggtcgaagaaacccagcgggttg                                <  3:249533‑M2/149‑114 (MQ=255)                                                                                                                   gCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATcgccgc                               >  6:188071/1‑149 (MQ=255)                                                                                                                   gCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATcgccgc                               >  4:358378/1‑149 (MQ=255)                                                                                                                           ccAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGCGTTGCAt                        >  4:338956/1‑148 (MQ=255)                                                                                                                                 ggCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGCGTTGCATGAAAgcg                 >  5:143723/1‑149 (MQ=255)                                                                                                                                           gTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGCGTTGCATGAAAGCGGCGGCGTgcg       >  7:252868/1‑149 (MQ=255)                                                                                                                                            tCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGCGTTg                           <  7:269589/128‑1 (MQ=255)                                                                                                                                            tCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGCGTTg                           >  8:269589/1‑128 (MQ=255)                                                                                                                                              aaCGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGCGTTGCATGAAAGCGGCGGCGTGCGCgg    <  3:358378/149‑1 (MQ=255)                                                                                                                                              aaCAATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGCGTTGCATGAAAGCGGCGGCGTGCGCgg    >  8:41150/1‑149 (MQ=255)                                                                                                                                                cGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGCGTTGCATGAAAGCGGCGGCGTGCGCGGgc  <  3:338956/149‑1 (MQ=255)                                                                                                                                                cGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGCGTTGCATGAAAGCGGCGGCGTGCGCGGgc  >  1:368165/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                ACCGACAACCCGCTGGGTTTCTTCGACCGCGAACTGGTGGCCTCGGTGATCGCCAACGTCATCACCAACGCCACCCGCTTTGCCGGGCACGCCTTGCTGATCACCATCGAAGAGGCCGACAACCAGTTGGCCATTTGCGTCAACGATGACGGCCCGGGTTATCCAAAGCACATGCTCGAGCGCCAGGAGGATTACATCCAGGGCATCGACTCGACCAGCGGCAGTACCGGCCTTGGGCTGTATTTCGCGGCGCGGATCGCCGCGTTGCATGAAAGCGGCGGCGTGCGCGGGC  >  NC_002947/888910‑889201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.