| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1154814 = | 58 (0.990) | 3 (0.050) | 3/240 | NT | 5.5% | coding (678/726 nt) | gltR‑II | two‑component system response regulator |
| ? | NC_002947 | 1154888 = | 49 (0.900) | coding (46/1455 nt) | PP_1013 | sensor histidine kinase | |||||
ACCCAGATAATGCTGGACAACCCCTGGGCCAGCAGGACAACCAGCAAGGTCAGCAGCAGCATCCGCCCCAGCAAGGAGCGCGGCAGCAGGCGCCAGCGCCGCTCAGGGCGCACAGCAGACATGTGCCGCCAACAAGTAGCCACTGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1154964‑1154814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgcgcTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGCCTGGCGCATTCCATGAGTG > NC_002947/1154888‑1155035 ACCCAGATAATGCTGGACAACCCCTGGGCCAGCAGGACAACCAGCAAGGTCAGCAGCAGCATCCGCCCCAGCAAGGAGCGCGGCAGCAGGCGCCAGCGCCGCTCAGGGCGCACAGCAGACATGTGCCGCCAACAAGTAGCCACTGCCGC > 8:355362/1‑149ACCCAGATAATGCTGGACAACCCCTGGGCCAGCAGGACAACCAGCAAGGTCAGCAGCAGCATCCGCCCCAGCAAGGAGCGCGGCAGCAGGCGCCAGCGCCGCTCAGGGCGCACAGCAGACATGTGCCGCCAACAAGTAGCCACTGCCGC > 6:137615/1‑149 CCCAGATAATGCTGGACAACCCCTGGGCCAGCAGGACAACCAGCAAGGTCAGCAGCAGCATCCGCCCCAGCAAGGAGCGCGGCAGCAGGCGCCAGCGCCGCTCAGGGCGCACAGCAGACATGTGCCGCCAACAAGTAGCCACTGCCGC < 1:290705/148‑1 GGACAACCCCTGGGCCAGCAGGACAACCAGCAAGGTCAGCAGCAGCATCCGCCCCAGCAAGGAGCGCGGCAGCAGGCGCCAGCGCCGCTCAGGGCGCACAGCAGACATGTGCCGCCAACAAGTAGCCACTGCC < 2:331952/133‑1 GGACAACCCCTGGGCCAGCAGGACAACCAGCAAGGTCAGCAGCAGCATCCGCCCCAGCAAGGAGCGCGGCAGCAGGCGCCAGCGCCGCTCAGGGCGCACAGCAGACATGTGCCGCCAACAAGTAGCCACTGCC > 1:331952/1‑133 AGCGCGGCAGCAGGCGCCAGCGCCGCTCAGGGCGCACAGCAGACATGTGCCGCCAACAAGTAGCCACTGCCGCGCTCC‑TGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGG > 3:88404/1‑149 GCGGCAGCAGGCGCCAGCGCCGCTCAGGGCGCACAGCAGACATGTGCCGCCAACAAGTAGCCACTGCCGCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGG > 4:169805/1‑148 CGCACAGCAGACATGTGCCGCCAACAAGTAGCCACTGCCGCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGG < 3:169805/149‑1 CTGCCGCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGCCTGGCGCAT < 2:290705/147‑1 TGCCGCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGCCTGGCGCATTC > 5:142766/1‑148 CCGCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGCCTGGCGCATTCCAT < 4:96845/149‑1 CCGCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGCCTGGCGCATTCCAT < 7:182062/149‑1 CCGCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGCCTGGCGCATTCCA < 5:233031/148‑1 CCGCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGCCTGGCGCATTCCA < 6:340073/148‑1 CGCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGCCTGGCGCATTCCATG < 5:131029/149‑1 GCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGCCTGGCGCATTCCATGA < 7:144652/149‑1 GCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGC < 7:116112/133‑1 GCGCTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGC > 8:116112/1‑133 CTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGCCTGGCGCATTCCATGAGTG < 1:269180/149‑1 ACCCAGATAATGCTGGACAACCCCTGGGCCAGCAGGACAACCAGCAAGGTCAGCAGCAGCATCCGCCCCAGCAAGGAGCGCGGCAGCAGGCGCCAGCGCCGCTCAGGGCGCACAGCAGACATGTGCCGCCAACAAGTAGCCACTGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1154964‑1154814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccgcgcTCCTTGCTGGGGCGGATGCTGCTGCTGACCTTGCTGGTTGTCCTGCTGGCCCAGGGGTTGTCCAGCATTATCTGGGTATCTCAGCTGCGCGCCAGCCAGCTTCAGGGGCTGCGTGCCAGCGCCAGCAGCCTGGCGCATTCCATGAGTG > NC_002947/1154888‑1155035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |