New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1357723	45 (0.760)	4 (0.070)	4/248	NT	7.8%	coding (904/1608 nt)	PP_1182	sensor histidine kinase
	?	NC_002947	= 1357754	51 (0.900)					coding (935/1608 nt)	PP_1182	sensor histidine kinase

CCTGCTGGTGCGTCAGCTGGAACGTCGTGTGTCGGGCCTGGAGATTGCTGCCACGCGCATCGCCCAGGGCAGCCTGGACACCCGCGTGCCGGCCGGCGACGCCGACTCGGTAGGGCGCCTGGCTGCTGCCTTCAATGGCATGGCCGAGCAC‑‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1357572‑1357723 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcac‑‑‑cAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGCTCGGCCATGCCATTGAAGGCAGCAGCCAGGCGCCCTACCGAGTCGGCGTCGCCGGCCGGCACGCGGGTGTCCAGGCTGCCCTGGGCGATGCGCGTGGCAGCAATCTCCAG  <  NC_002947/1357754‑1357609                                                                                                                                                                                                                                                                                                               CCTGCTGGTGCGTCAGCTGGAACGTCGTGTGTCGGGCCTGGAGATTGCTGCCACGCGCATCGCCCAGGGCAGCCTGGACACCCGCGTGCCGGCCGGCGACGCCGACTCGGTAGGGCGCCTGGCTGCTGCCTTCAATGGCATGGCCGAG                                                                                                                                                           >  8:11118/1‑148  CTGCTGGTGCGTCAGCTGGAACGTCGTGTGTCGGGCCTGGAGATTGCTGCCACGCGCATCGCCCAGGGCAGCCTGGACACCCGCGTGCCGGCCGGCGACGCCGACTCGGTAGGGCGCCTGGCTGCTGCCTTCAATGGCATGGCCGAGCA                                                                                                                                                         >  7:217916/1‑149    GCTGGTGCGTCAGCTGGAACGTCGTGTGTCGGGCCTGGAGATTGCTGCCACGCGCATCGCCCAGGGCAGCCTGGACACCCGCGTGCCGGCCGGCGACGCCGACTCGGTAGGGCGCCTGGCTGCTGCCTTCAATGGCATGGCCGAGCAC‑‑‑C                                                                                                                                                    >  1:175458/1‑149                                        GGAGATTGCTGCCACGCGCATCGCCCAGGGCAGCCTGGACACCCGCGTGCCGGCCGGCGACGCCGACTCGGTAGGGCGCCTGGCTGCTGCCTTCAATGGCATGGCCGAGCAC‑‑‑CAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGC                                                                                                                <  7:221599/149‑1                                         GAGATTGCTGCCACGCGCATCGCCCAGGGCAGCCTGGACACCCGCGTGCCGGCCGGCGACGCCGACTCGGTAGGGCGCCTGGCTGCTGCCTTCAATGGCATGGCCGAGCACCTGCAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAG                                                                                                                    <  3:48278/147‑1                                                    CACGCGCATCGCCCAGGGCAGCCTGGACACCCGCGTGCCGGCCGGCGACGCCGACTCGGTAGGGCGCCTGGCTGCTGCCTTCAATGGCATGGCCGAGCAC‑‑‑CAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGCTCG                                                                                                             >  1:170420/1‑140                                                    CACGCGCATCGCCCAGGGCAGCCTGGACACCCGCGTGCCGGCCGGCGACGCCGACTCGGTAGGGCGCCTGGCTGCTGCCTTCAATGGCATGGCCGAGCAC‑‑‑CAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGCTCG                                                                                                             <  2:170420/140‑1                                                                                                                                                     CAC‑‑‑CAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGCTCGGCCATGCCATTGAAGGCAGCAGCCAGGCGCCCTACCGAGTCGGCGTCGCCGGCCGGCAAGCGGCTGTCCAGGCTGCCCTGGGCGATGCGCGTGGCAGCAATCTC     >  3:27561/1‑147                                                                                                                                                      AC‑‑‑CAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGCTCGGCCATGCCATTGAAGGCAGCAGCCAGGCGCCCTACCGAGTCGGCGTCGCCGGCCGGCACGCGGGTGTCGAGGCTGCCCTGGGCGATGCGCGTGGCAGCAATCTCCAG  <  2:302253/149‑1                                                                                                                                                      AC‑‑‑CAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGCTCGGCCATGCCATTGAAGGCAGCAGCCAGGCGCCCTACCGAGTCGGCGTCGCCGGCCGGCACGCGGGTGTCCAGGCTGCCCTGGGCGATGCGCGTGGCAGCAATCTCCAG  >  7:312144/1‑149                                                                                                                                                                                                                                                                                                               CCTGCTGGTGCGTCAGCTGGAACGTCGTGTGTCGGGCCTGGAGATTGCTGCCACGCGCATCGCCCAGGGCAGCCTGGACACCCGCGTGCCGGCCGGCGACGCCGACTCGGTAGGGCGCCTGGCTGCTGCCTTCAATGGCATGGCCGAGCAC‑‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1357572‑1357723 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcac‑‑‑cAGCTCGCGCTGCATGGTCAGCGAGCGCTGCAGGTGCTCGGCCATGCCATTGAAGGCAGCAGCCAGGCGCCCTACCGAGTCGGCGTCGCCGGCCGGCACGCGGGTGTCCAGGCTGCCCTGGGCGATGCGCGTGGCAGCAATCTCCAG  <  NC_002947/1357754‑1357609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.