| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1996831 | 40 (0.680) | 4 (0.070) | 4/246 | NT | 9.4% | coding (638/882 nt) | rfbA | dTDP‑glucose pyrophosphorylase |
| ? | NC_002947 | = 1996863 | 39 (0.700) | coding (606/882 nt) | rfbA | dTDP‑glucose pyrophosphorylase | |||||
TTGATCCAGCCAGCGCGGTAGCAAATTTCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1996678‑1996831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacctCAACAACCTTTACTTGCAGCAGCAGCAGTTGCAGGTCGAAATCATGGGCCGTGGCTATGCGTGGCTCGACACCGGCACGCACGACAGTCTGCTGGAGGCTAGCCAGTACATCGCAACCATGGAGCGCCGTCAGGGCTTGAAAGTCGC < NC_002947/1996863‑1996717 TTGATCCAGCCAGCGCGGTAGCAAATTTGCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTC < 6:6677/149‑1 ATCCAGCCAGCGCGGTAGCAAATTTCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGAC < 7:235015/149‑1 TCCAGCCAGCGCGGTAGCAAATTTCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGAC < 3:200815/148‑1 TCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGAC < 1:36081/122‑1 TCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGAC > 2:36081/1‑122 TTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTCAACAACCTTTACTTGCAGCAGCAGCAGTTGCAGGTCG > 7:336729/1‑148 AAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTCAACAACCTTTACTTGCAGCAGCAGCAGTTGCAGGTCGAAAT < 7:13319/148‑1 GCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTCAACAACCTTTACTTGCAGCAGCAGCAGTTGCAGGTCGAAATCAT < 6:132851/149‑1 CCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTCAACAACCTTTACTTGCAGCAGCAGCAGTTGCAGGTCGAAATCATG < 8:336729/149‑1 AGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGAC > 8:46453/1‑59 CTCAACAACCTTTACTTGCAGCAGCAGCAGTTGCAGGTCGAAATCATGGGCCGTGGCTATGCGTGGCTCGACACCGGCACGCACGACAGTCTGCTGGAGGCTAGCCAGTACATCGCAACCATGGAGCGCCGTCAGGGCTTGAAAGTCGC < 2:291017/149‑1 TTGATCCAGCCAGCGCGGTAGCAAATTTCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1996678‑1996831‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacctCAACAACCTTTACTTGCAGCAGCAGCAGTTGCAGGTCGAAATCATGGGCCGTGGCTATGCGTGGCTCGACACCGGCACGCACGACAGTCTGCTGGAGGCTAGCCAGTACATCGCAACCATGGAGCGCCGTCAGGGCTTGAAAGTCGC < NC_002947/1996863‑1996717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |