New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1996831	40 (0.680)	4 (0.070)	4/246	NT	9.4%	coding (638/882 nt)	rfbA	dTDP‑glucose pyrophosphorylase
	?	NC_002947	= 1996863	39 (0.700)					coding (606/882 nt)	rfbA	dTDP‑glucose pyrophosphorylase

AGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACTGCCGGTTTTTCTTCCAGCGACAATACGCGAC  >  NC_002947/1996715‑1997008                                                                                                                                                     |                                                                                                                                                  aGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGttgttg                                                                                                                                                   <  1:155021/149‑1 (MQ=255)   gCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGag                                                                                                                                                 <  2:291017‑M2/149‑3 (MQ=255)          tCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGt                                                                                                                                           <  1:291017/148‑1 (MQ=255)            aaGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGAt                                                                                                                                        >  5:349657/1‑149 (MQ=255)              gCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGATGTCGGTGAttt                                                                                                                                      >  7:117477/1‑149 (MQ=255)                           tCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGTCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACg                                                                                                                         >  8:187917/1‑149 (MQ=255)                             cATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAg                                                                                                                                  >  5:177544/1‑138 (MQ=255)                             cATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAg                                                                                                                                  <  6:177544/138‑1 (MQ=255)                              aTGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGTCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTgg                                                                                                                      <  7:187917/149‑1 (MQ=255)                                  ttGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGTCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGaa                                                                                                                  <  3:235704/149‑1 (MQ=255)                                        tGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTc                                                                                                            <  2:212509/149‑1 (MQ=255)                                          tACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCa                                                                                                           <  5:122142/148‑1 (MQ=255)                                          tACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAg                                                                                                          <  8:231315/149‑1 (MQ=255)                                            cTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCt                                                                                                        >  1:349960/1‑149 (MQ=255)                                                 tAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTcgc                                                                                                     >  3:184866/1‑147 (MQ=255)                                                        cagcagACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGa                                                                                             <  2:349960/148‑1 (MQ=255)                                                        cagcagACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGAt                                                                                            <  3:135164/149‑1 (MQ=255)                                                           cagACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGa                                                                                         <  4:364694/149‑1 (MQ=255)                                                              aCTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAA‑‑‑CTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCt                                                                                   >  5:175421/1‑149 (MQ=255)                                                                tGTCGTGCGTGCCGGTGTCGAGCCACGCATATCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTAcc                                                                                    >  1:225859/1‑149 (MQ=255)                                                                  tCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCt                                                                                   <  4:184866/148‑1 (MQ=255)                                                                     tgcgtgcCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGAtt                                                                               <  6:349657/149‑1 (MQ=255)                                                                      gcgtgcCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTg                                                                              >  3:122315/1‑149 (MQ=255)                                                                            cGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCa                                                                           >  7:7233/1‑146 (MQ=255)                                                                             ggTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAg                                                                        >  5:333017/1‑148 (MQ=255)                                                                                 tCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTcc                                                                                                                                    <  7:320924/84‑1 (MQ=255)                                                                                 tCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTcc                                                                                                                                    >  8:320924/1‑84 (MQ=255)                                                                                          gCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAg                                                                <  1:271704/143‑1 (MQ=255)                                                                                          gCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAg                                                                >  2:271704/1‑143 (MQ=255)                                                                                                       ccATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATa                                                                   <  2:6145/127‑1 (MQ=255)                                                                                                       ccATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATa                                                                   >  1:6145/1‑127 (MQ=255)                                                                                                        cATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGaggtcgaaatcatgggccgtggctatgcgtggctcgacaccggcacgcacgacagtctgctggaggctagccagtacatcgcaaccatggagcgccgtcaggg                                            <  8:336729‑M2/149‑104 (MQ=255)                                                                                                         aTGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGaggtcgaaatcatgggccgtggctatgcgtggctcgacaccggcacgcacgacagtctgctggaggctagccagtacatcgcaaccatggagcgccgtcagggc                                           <  6:132851‑M2/149‑105 (MQ=255)                                                                                                            aTTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGaggtcgaaatcatgggccgtggctatgcgtggctcgacaccggcacgcacgacagtctgctggaggctagccagtacatcgcaaccatggagcgccgtcagggctt                                         <  7:13319‑M2/148‑107 (MQ=255)                                                                                                                cGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGaggtcgaaatcatgggccgtggctatgcgtggctcgacaccggcacgcacgacagtctgctggaggctagccagtacatcgcaaccatggagcgccgtcagggcttgaaa                                     >  7:336729‑M2/1‑38 (MQ=255)                                                                                                                   ccTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACt                                 >  6:371302/1‑149 (MQ=255)                                                                                                                   ccTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACt                                 >  6:92905/1‑149 (MQ=255)                                                                                                                       cAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTAc                                                                                     <  1:136955/93‑1 (MQ=255)                                                                                                                       cAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTAc                                                                                     >  2:136955/1‑93 (MQ=255)                                                                                                                       cAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACTGc                               <  8:117477/147‑1 (MQ=255)                                                                                                                        aaCTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTg                                      <  6:120938/139‑1 (MQ=255)                                                                                                                        aaCTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTg                                      >  5:120938/1‑139 (MQ=255)                                                                                                                             ctgctgctgcAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACTGCCGGttt                         <  2:4303/147‑1 (MQ=255)                                                                                                                                ctgctgcAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACTGCCGGTTTttct                     <  6:333017/148‑1 (MQ=255)                                                                                                                                          tAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACTGACGGTGTTTCTTCCATCGACaa          >  2:305818/1‑149 (MQ=255)                                                                                                                                             aGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACTGCCGGTTTTTCTTCCa                 <  8:76974/139‑1 (MQ=255)                                                                                                                                             aGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACTGCCGGTTTTTCTTCCa                 >  7:76974/1‑139 (MQ=255)                                                                                                                                                   ttgAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACTGCCGGTTTTTCTTCCAGCGACAATACGCGAc  <  8:7233/148‑1 (MQ=255)                                                                                                                                                     gAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGAtt                                                                                           >  5:144785/1‑57 (MQ=255)                                                                                                                                                     gAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGAtt                                                                                           <  6:144785/57‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  AGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACTGCCGGTTTTTCTTCCAGCGACAATACGCGAC  >  NC_002947/1996715‑1997008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.