New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1996831	40 (0.680)	4 (0.070)	4/246	NT	9.4%	coding (638/882 nt)	rfbA	dTDP‑glucose pyrophosphorylase
	?	NC_002947	= 1996863	39 (0.700)					coding (606/882 nt)	rfbA	dTDP‑glucose pyrophosphorylase

CAGCGCGGTAGCAAATTTCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACTG  >  NC_002947/1996688‑1996978                                                                                                                                                |                                                                                                                                                    cagcGCGGTAGCAAATTTCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAAc                                                                                                                                                >  5:304809/1‑149 (MQ=255)    cgcgGTAGCAAATTTCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATTCCCACGGCCCATGATTTCGACCTGCAActgc                                                                                                                                             <  1:32477/149‑1 (MQ=255)            cAAATTTCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGTCACGGCCCATGATTTCGACCTGCAActgctgctgctg                                                                                                                                     >  4:235704/1‑149 (MQ=255)             aaaTTTCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAActgctgctgctg                                                                                                                                     >  6:122142/1‑148 (MQ=255)             aaaTTTCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACtgctgctgctgc                                                                                                                                    <  2:79874/149‑1 (MQ=255)                tttCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAg                                                                                                                                 >  1:212509/1‑149 (MQ=255)                    cTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTaaa                                                                                                                             <  6:304809/149‑1 (MQ=255)                      cAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAgg                                                                                                                           >  4:135164/1‑149 (MQ=255)                       aGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAg                                                                                                                            <  8:52353/147‑1 (MQ=255)                            aGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGttgttg                                                                                                                     <  1:155021/149‑1 (MQ=255)                              gCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGag                                                                                                                   <  2:291017‑M2/149‑3 (MQ=255)                                   tttCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTcaacaacctttacttgcagcagcagcagttgcaggtcg                                                                                                               >  7:336729‑M1/1‑110 (MQ=255)                                     tCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGt                                                                                                             <  1:291017/148‑1 (MQ=255)                                       aaGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTcaacaacctttacttgcagcagcagcagttgcaggtcgaaat                                                                                                           <  7:13319‑M1/148‑43 (MQ=255)                                       aaGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGAt                                                                                                          >  5:349657/1‑149 (MQ=255)                                         gCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTcaacaacctttacttgcagcagcagcagttgcaggtcgaaatcat                                                                                                        <  6:132851‑M1/149‑46 (MQ=255)                                         gCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGATGTCGGTGAttt                                                                                                        >  7:117477/1‑149 (MQ=255)                                          cccTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTcaacaacctttacttgcagcagcagcagttgcaggtcgaaatcatg                                                                                                       <  8:336729‑M1/149‑47 (MQ=255)                                                      tCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGTCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACg                                                                                           >  8:187917/1‑149 (MQ=255)                                                        cATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAg                                                                                                    <  6:177544/138‑1 (MQ=255)                                                        cATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAg                                                                                                    >  5:177544/1‑138 (MQ=255)                                                         aTGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGTCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTgg                                                                                        <  7:187917/149‑1 (MQ=255)                                                             ttGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGTCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGaa                                                                                    <  3:235704/149‑1 (MQ=255)                                                                   tGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTc                                                                              <  2:212509/149‑1 (MQ=255)                                                                     tACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCa                                                                             <  5:122142/148‑1 (MQ=255)                                                                     tACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAg                                                                            <  8:231315/149‑1 (MQ=255)                                                                       cTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCt                                                                          >  1:349960/1‑149 (MQ=255)                                                                            tAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTcgc                                                                       >  3:184866/1‑147 (MQ=255)                                                                             aGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGgttgtt                                                                                                                      >  3:224420/1‑99 (MQ=255)                                                                             aGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGgttgtt                                                                                                                      <  4:224420/99‑1 (MQ=255)                                                                                   cagcagACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGa                                                               <  2:349960/148‑1 (MQ=255)                                                                                   cagcagACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGAt                                                              <  3:135164/149‑1 (MQ=255)                                                                                      cagACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGa                                                           <  4:364694/149‑1 (MQ=255)                                                                                         aCTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAA‑‑‑CTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCt                                                     >  5:175421/1‑149 (MQ=255)                                                                                           tGTCGTGCGTGCCGGTGTCGAGCCACGCATATCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTAcc                                                      >  1:225859/1‑149 (MQ=255)                                                                                             tCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCt                                                     <  4:184866/148‑1 (MQ=255)                                                                                                tgcgtgcCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGAtt                                                 <  6:349657/149‑1 (MQ=255)                                                                                                 gcgtgcCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTg                                                >  3:122315/1‑149 (MQ=255)                                                                                                       cGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCa                                             >  7:7233/1‑146 (MQ=255)                                                                                                        ggTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAg                                          >  5:333017/1‑148 (MQ=255)                                                                                                            tCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTcc                                                                                                      >  8:320924/1‑84 (MQ=255)                                                                                                            tCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTcc                                                                                                      <  7:320924/84‑1 (MQ=255)                                                                                                                     gCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAg                                  <  1:271704/143‑1 (MQ=255)                                                                                                                     gCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAg                                  >  2:271704/1‑143 (MQ=255)                                                                                                                                  ccATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATa                                     >  1:6145/1‑127 (MQ=255)                                                                                                                                  ccATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATa                                     <  2:6145/127‑1 (MQ=255)                                                                                                                                   cATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGaggtcgaaatcatgggccgtggctatgcgtggctcgacaccggcacgcacgacagtctgctggaggctagccagtacatcgcaaccatggagcgccgtcaggg              <  8:336729‑M2/149‑104 (MQ=255)                                                                                                                                    aTGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGaggtcgaaatcatgggccgtggctatgcgtggctcgacaccggcacgcacgacagtctgctggaggctagccagtacatcgcaaccatggagcgccgtcagggc             <  6:132851‑M2/149‑105 (MQ=255)                                                                                                                                       aTTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGaggtcgaaatcatgggccgtggctatgcgtggctcgacaccggcacgcacgacagtctgctggaggctagccagtacatcgcaaccatggagcgccgtcagggctt           <  7:13319‑M2/148‑107 (MQ=255)                                                                                                                                           cGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGaggtcgaaatcatgggccgtggctatgcgtggctcgacaccggcacgcacgacagtctgctggaggctagccagtacatcgcaaccatggagcgccgtcagggcttgaaa       >  7:336729‑M2/1‑38 (MQ=255)                                                                                                                                              ccTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACt   >  6:92905/1‑149 (MQ=255)                                                                                                                                              ccTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACt   >  6:371302/1‑149 (MQ=255)                                                                                                                                               cTcaacaacctttacttgcagcagcagcagttgcaggtcgaaatcatgggccgtggctatgcgtggctcgacaccggcacgcacgacagtctgctggaggctagccagtacatcgcaaccatggagcgccgtcagggcttgaaagtcgc  <  2:291017‑M1/149‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                    CAGCGCGGTAGCAAATTTCCTCAGGGCAGGCGACTTTCAAGCCCTGACGGCGCTCCATGGTTGCGATGTACTGGCTAGCCTCCAGCAGACTGTCGTGCGTGCCGGTGTCGAGCCACGCATAGCCACGGCCCATGATTTCGACCTGCAACTGCTGCTGCTGCAAGTAAAGGTTGTTGAGGTCGGTGATTTCCAGCTCGCCACGTGGGGAAGGCTTCAGCTCGCGAGCCAGATTGACTACCTGATTGTCATAGAAATACAGGCCGGTGACCGCATAGCTAGACTTTGGAACTG  >  NC_002947/1996688‑1996978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.