| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2737153 = | 39 (0.660) | 3 (0.050) | 3/248 | NT | 6.7% | coding (4051/4422 nt) | PP_2394 | leucine‑rich repeat‑containing protein |
| ? | NC_002947 | 2737195 = | 46 (0.810) | coding (4093/4422 nt) | PP_2394 | leucine‑rich repeat‑containing protein | |||||
GCGTGACAGGTAATCAGCAATGCCCTCCCGGGTCTGTCGCGCCAGGACCCTTTCACGGGCCAGGAGAAGGTCCTGGTTACTCAAGGCAGGGATCCCTGCATAGAGCATTTCATCGGGTTGGCCAGGCAAGTCCAGAGACTTGCGCAAGCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2737305‑2737153‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgatGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGATTACCTGTCACGCCAGTGGTTCTGGCAGGATTACCTGCACAAGACTTT > NC_002947/2737195‑2737340 GCGTGACAGGTAATCAGCAATGCCCTCCCGGGTCTGTCGCGCCAGGACCCTTTCACGGGCCAGGAGAAGGTCCTGGTTACTCAAGGCAGGGATCCCTGCATAGAGCATTTCATCGGGTTGGCCAGGCAAGTCCAGAGACTTGCGCAAGC < 6:67030/149‑1 AATCAGCAATGCCCTCCCGGGTCTGTCGCGCCAGGACCCTTTCACGGGCCAGGAGAAGGTCCTGGTTACTCAAGGCAGGGATCCCTGCATAGAGCATTTCATCGGGTTGGCCAGGCAAGTCCAGAGACTTGCGCAAGC < 5:297591/138‑1 AATCAGCAATGCCCTCCCGGGTCTGTCGCGCCAGGACCCTTTCACGGGCCAGGAGAAGGTCCTGGTTACTCAAGGCAGGGATCCCTGCATAGAGCATTTCATCGGGTTGGCCAGGCAAGTCCAGAGACTTGCGCAAGC > 6:297591/1‑138 AGCATTTCATCGGGTTGGCCAGGCAAGTCCAGAGACTTGCGCAAGCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGAT > 2:194400/1‑149 TTTCATCGGGTTGGCCAGGCAAGTCCAGAGACTTGCGCAAGCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGATTACC > 6:898/1‑149 CATCGGGTTGGCCAGGCAAGTCCAGAGACTTGCGCAAGCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGATTACCTGT > 3:104833/1‑149 GATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGATTACCTGTCACGCCAGTGGTTCTGGCAGGATTACCTGCACAAGACTTT > 4:36573/1‑149 GATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGCGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGATTACCTGTCACGCCAGTGGTTCTGGCAGGATTACCTGCACAAGACTTT > 2:133501/1‑149 GCGTGACAGGTAATCAGCAATGCCCTCCCGGGTCTGTCGCGCCAGGACCCTTTCACGGGCCAGGAGAAGGTCCTGGTTACTCAAGGCAGGGATCCCTGCATAGAGCATTTCATCGGGTTGGCCAGGCAAGTCCAGAGACTTGCGCAAGCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2737305‑2737153‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgatGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGATTACCTGTCACGCCAGTGGTTCTGGCAGGATTACCTGCACAAGACTTT > NC_002947/2737195‑2737340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |