New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2737153 =	39 (0.660)	3 (0.050)	3/248	NT	6.7%	coding (4051/4422 nt)	PP_2394	leucine‑rich repeat‑containing protein
	?	NC_002947	2737195 =	46 (0.810)					coding (4093/4422 nt)	PP_2394	leucine‑rich repeat‑containing protein

CAGCGGATCTGCCCGGCCTGAGCGGGCCTTGCTGAAGCTCGGTGCCCGGATGTGGCGGTTGGCGGTGCTTGAGCAAATTG‑CCGCTGAACATGCTTATCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGATTACCTGT  >  NC_002947/2737008‑2737300                                                                                                                                                   |                                                                                                                                                    aaagtcttgtgcaggtaatcctgccagaaccactggcgtgacaggtaatcagcaatgccctcccgggtctgtcgcgccaggacgctttcacgggccaggagaaggtcctggttactcaaggcagggatccctgcatagagcatttcATc                                                                                                                                                   >  2:133501‑M1/147‑149 (MQ=255) aaagtcttgtgcaggtaatcctgccagaaccactggcgtgacaggtaatcagcaatgccctcccgggtctgtcgcgccaggaccctttcacgggccaggagaaggtcctggttactcaaggcagggatccctgcatagagcatttcATc                                                                                                                                                   >  4:36573‑M1/147‑149 (MQ=255)   gCGGATCTGCCCGGCCTGCGCGGGCCTTGCTTAAGCGCGGTGCCCGCATGTGGCGGTTGGGGGTGCTTTAGAAAATTG‑CCGCTTAACATGTTTATCGGGGGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGc                                                                                                                                                <  2:264157/149‑1 (MQ=255)            ccgggCCTTCGCGGGCGTTGGTGAAGGTCGGGGCCCGGTTGTGGGGGTTGGCGGTGCTTGAGAAAATTG‑CGGCTTAAAATGCTTATCGGGGGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTgcgc                                                                                                                                          <  2:119274/143‑1 (MQ=255)                  cTGAGGGGGCCTTGCTTAAGCTCGGTGCCCGTATGTGGCGGTTGGCGGTGTTTTACCAAATTC‑CCGCTTAAAATGCTTATCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTg                                                                                                                                 <  1:116929/149‑1 (MQ=255)                          gCCTTGCTGAAGCTCGGTGCCCGGATGTGGCGGTTGGCGGTGCTTGAGCAAATTG‑CCGCTGAACATGCTTATCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGcc                                                                                                                         >  5:68529/1‑149 (MQ=255)                                         acaggtaatcagcaatgccctcccgggtctgtcgcgccaggaccctttcacgggccaggagaaggtcctggttactcaaggcagggatccctgcatagagcatttcATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATg                                                                                                           >  3:104833‑M1/107‑149 (MQ=255)                                            ggtaatcagcaatgccctcccgggtctgtcgcgccaggaccctttcacgggccaggagaaggtcctggttactcaaggcagggatccctgcatagagcatttcATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGaaa                                                                                                        >  6:898‑M1/104‑149 (MQ=255)                                             ccgggATGGGGGGGTTGCGGGGGCTTGAGCAATTTC‑CCGCTTAACATCCTTATGGGGGGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAAt                                                                                                       <  3:6207/145‑1 (MQ=255)                                             ccgggATGGGGCGGTGGGGGGTGC‑TGCACAAATTGCCCCCTCAACAGGCTAAGCGGGGGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATg                                                                                                      <  1:235323/146‑1 (MQ=255)                                                atcagcaatgccctcccgggtctgtcgcgccaggaccctttcacgggccaggagaaggtcctggttactcaaggcagggatccctgcatagagcatttcATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGct                                                                                                    >  2:194400‑M1/100‑149 (MQ=255)                                                         ggttggcggtGCTTGAGCAAATTG‑CCGCTGAACATGCTTATCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCGGGCCACCCCGATGAAATGATCTATGCAgg                                                                                           >  6:355481/1‑148 (MQ=255)                                                                       gAGCAAATTG‑CCGCTGAACATGCTTATCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAg                                                                            >  4:53072/1‑149 (MQ=255)                                                                        aGCAAATTG‑CCGCTGAACATGCTTATCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAg                                                                            >  5:220138/1‑148 (MQ=255)                                                                         gCAAATTG‑CCGCTGAACATGCTTATCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGt                                                                           >  1:4181/1‑148 (MQ=255)                                                                         gCAAATTG‑CCGCTGAACATGCTTATCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGt                                                                           >  5:330021/1‑148 (MQ=255)                                                                           aaaTTC‑CCGCTCAACATGCGTTTCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATTAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAAc                                                                        <  6:68529/149‑1 (MQ=255)                                                                                        aaCATGCTTATCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTtctc                                                            >  6:207968/1‑149 (MQ=255)                                                                                           agcgttATCGGGGGGGGGCGGCCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTg                                                         <  5:329860/145‑1 (MQ=255)                                                                                           aTGCTTATCGGGTGGGGGCGGGCACTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTg                                                         >  1:355628/1‑149 (MQ=255)                                                                                                  tCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGt                                                   <  3:79045/148‑1 (MQ=255)                                                                                                    gggTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTaa                                                                         >  6:123345/1‑124 (MQ=255)                                                                                                           ggcgggcgCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGc                                                       <  1:125783/135‑1 (MQ=255)                                                                                                           ggcgggcgCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGc                                                       >  2:125783/1‑135 (MQ=255)                                                                                                              gggcgCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAg                                                                     <  4:24927/118‑1 (MQ=255)                                                                                                              gggcgCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTgg                                      >  5:194674/1‑149 (MQ=255)                                                                                                                 cgcTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGgcgc                                   <  2:4181/149‑1 (MQ=255)                                                                                                                 cgcTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGgcgc                                   <  6:330021/149‑1 (MQ=255)                                                                                                                        tcgatcgaATTCGCCTTGGCCTATAGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCAGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGAGCGACAGAc                            >  3:50780/1‑149 (MQ=255)                                                                                                                          gatcgaATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGAccc                          >  3:43292/1‑149 (MQ=255)                                                                                                                           atcgaATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTg                                                                                                                                 <  4:146225/45‑1 (MQ=255)                                                                                                                           atcgaATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTg                                                                                                                                 >  3:146225/1‑45 (MQ=255)                                                                                                                           atcgaATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCg                         >  4:58191/1‑149 (MQ=255)                                                                                                                           atcgaATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCg                         >  6:341790/1‑149 (MQ=255)                                                                                                                            tcgaATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCgg                        >  1:285230/1‑149 (MQ=255)                                                                                                                                aTTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAgg                    <  5:341790/149‑1 (MQ=255)                                                                                                                                aTTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAgg                    >  4:158913/1‑149 (MQ=255)                                                                                                                                aTTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAgg                    >  7:75995/1‑149 (MQ=255)                                                                                                                                   cGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCa                 >  6:345536/1‑149 (MQ=255)                                                                                                                                    gCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCAt                <  4:43292/149‑1 (MQ=255)                                                                                                                                            cTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGaaa                                               <  6:174079/110‑1 (MQ=255)                                                                                                                                            cTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGaaa                                               >  5:174079/1‑110 (MQ=255)                                                                                                                                             tATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGAt         >  5:377758/1‑147 (MQ=255)                                                                                                                                             tATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGAt         <  6:377758/147‑1 (MQ=255)                                                                                                                                               tCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGATTAc      <  5:345536/148‑1 (MQ=255)                                                                                                                                                  aaTCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGATTACCTGt  <  6:220138/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CAGCGGATCTGCCCGGCCTGAGCGGGCCTTGCTGAAGCTCGGTGCCCGGATGTGGCGGTTGGCGGTGCTTGAGCAAATTG‑CCGCTGAACATGCTTATCGGGTGGGGGCGGGCGCTGAATCGATCGAATTCGCCTTGGCCTATCGAATCGGCTTGCGCAAGTCTCTGGACTTGCCTGGCCAACCCGATGAAATGCTCTATGCAGGGATCCCTGCCTTGAGTAACCAGGACCTTCTCCTGGCCCGTGAAAGGGTCCTGGCGCGACAGACCCGGGAGGGCATTGCTGATTACCTGT  >  NC_002947/2737008‑2737300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.