New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2747226	34 (0.580)	4 (0.070)	4/246	NT	10.1%	coding (543/1287 nt)	PP_2402	sensor histidine kinase
	?	NC_002947	= 2747251	39 (0.700)					coding (518/1287 nt)	PP_2402	sensor histidine kinase

AATGGCCGCCAGCAACTGCATGCGTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2747073‑2747226 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggCCATCGGCCCGCTAACCCGTCTGGCCCAGGCAGTGGACAACCTCGACCCGGACCAGCCCGGCGTTCAACTGGATGAAAGCGGCCCACGCGAGGTGCGTTACGCTGCCGTGGCCTTCAACGCCCTGCAGGCGCGCATTGCTGCC  <  NC_002947/2747251‑2747109                                                                                                                                                                                                                                                                                                           AATGGCCGCCAGCAACTGCATGCGTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTG                                                                                                                                                      <  6:182015/149‑1  ATGGCCGCCAGCAACTGCATGCGTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGC                                                                                                                                                     >  1:326242/1‑149                   CATGCGTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCC                                                                                                                                                    >  3:160929/1‑133                   CATGCGTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCC                                                                                                                                                    <  4:160929/133‑1                        GTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGCCATCGGCCCGCTAACCC                                                                                                                               >  3:221635/1‑149                                      GCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGCCATCGGCCCGCTAACCCGTCTGGCCCAGGCA                                                                                                                 <  4:221635/149‑1                                                  GCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGCCATCGGCCCGCTAACCCGTCTGGCCCAGGCAGTG                                                                                                              <  5:111265/140‑1                                                  GCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGCCATCGGCCCGCTAACCCGTCTGGCCCAGGCAGTG                                                                                                              >  6:111265/1‑140                                                                                                                                                     GCCTGGCCATCGGCCCGCTAACCCGTCTGGCCCAGGCAGTGGACAACCTCGACCCGGACCAGCCCGGCGTTCAACTGGATGAAAGCGGCCCACGCGAGGTGCGTTACGCTGCCGTGGCCTTCAACGCCCTGCAGGCGCGCATTGCTGCC  >  1:104045/1‑149                                                                                                                                                                                                                                                                                                           AATGGCCGCCAGCAACTGCATGCGTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2747073‑2747226 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggCCATCGGCCCGCTAACCCGTCTGGCCCAGGCAGTGGACAACCTCGACCCGGACCAGCCCGGCGTTCAACTGGATGAAAGCGGCCCACGCGAGGTGCGTTACGCTGCCGTGGCCTTCAACGCCCTGCAGGCGCGCATTGCTGCC  <  NC_002947/2747251‑2747109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.