New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2747226	34 (0.580)	4 (0.070)	4/246	NT	10.1%	coding (543/1287 nt)	PP_2402	sensor histidine kinase
	?	NC_002947	= 2747251	39 (0.700)					coding (518/1287 nt)	PP_2402	sensor histidine kinase

CAGCAACTGCATGCGTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGC  >  NC_002947/2747082‑2747369                                                                                                                                                 |                                                                                                                                                cAGCAACTGCATGCGTTCCTTGAGGTGGGCAGTAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGc                                                                                                                                               >  3:316954/1‑147 (MQ=255) cAGCAACTGCATGCGTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGc                                                                                                                                               >  7:149360/1‑147 (MQ=255)      aCTGCATGCGTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACgg                                                                                                                                        <  2:295229/149‑1 (MQ=255)              cgttcgttGAGG‑GGGCAGGAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCgg                                                                                                                                <  4:200607/148‑1 (MQ=255)               gTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGccatcggcccgctaaccc                                                                                                                               >  3:221635‑M1/1‑131 (MQ=255)                   cTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGa                                                                                                                           <  7:354682/149‑1 (MQ=255)                      gAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGAt                                                                                                                          <  2:326242/147‑1 (MQ=255)                            ggCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGccaggc                                                                                                                  >  1:104045‑M2/1‑143 (MQ=255)                             gcagcaATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGccatcggcccgctaacccgtctggcccaggca                                                                                                                 <  4:221635‑M1/149‑33 (MQ=255)                                 caATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGTGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTAcc                                                                                                             >  6:148937/1‑149 (MQ=255)                                        cgcCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCgccagcc                                                                                                      <  6:212901/149‑1 (MQ=255)                                         gcCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGccatcggcccgctaacccgtctggcccaggcagtg                                                                                                              >  6:111265‑M1/1‑105 (MQ=255)                                         gcCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGccatcggcccgctaacccgtctggcccaggcagtg                                                                                                              <  5:111265‑M1/140‑36 (MQ=255)                                         gcCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGAt                                                                                                                          >  6:46524/1‑128 (MQ=255)                                         gcCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGAt                                                                                                                          <  5:46524/128‑1 (MQ=255)                                              cAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTa                                                                                                 <  8:149360/148‑1 (MQ=255)                                                gggCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTacac                                                                                              <  5:3014/149‑1 (MQ=255)                                                            ccACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAacagcaca                                                                                  <  4:316954/149‑1 (MQ=255)                                                              aaggCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAacagcacagc                                                                                >  6:367645/3‑149 (MQ=255)                                                                  cAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCAcagccagc                                                                            <  5:148937/149‑1 (MQ=255)                                                                           gCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACacagcaa                                                                                         <  4:172460/127‑1 (MQ=255)                                                                           gCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACacagcaa                                                                                         >  3:172460/1‑127 (MQ=255)                                                                                tCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAAAAGCACAGCCAGCTGAATCAGCAGcac                                                              >  6:242919/1‑149 (MQ=255)                                                                                  gcgTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGcacca                                                            >  3:288088/1‑149 (MQ=255)                                                                                       ggCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACgg                                                         <  7:80252/147‑1 (MQ=255)                                                                                       ggCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACgg                                                         >  8:80252/1‑147 (MQ=255)                                                                                               tCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACg                                               >  4:19205/1‑149 (MQ=255)                                                                                                  tCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGc                                            >  1:221940/1‑149 (MQ=255)                                                                                                   ccAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGc                                            >  8:315741/1‑148 (MQ=255)                                                                                                      gTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTAcc                                        >  2:134777/1‑149 (MQ=255)                                                                                                            cGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCgg                                      >  5:328400/1‑145 (MQ=255)                                                                                                            cGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCgg                                      <  6:328400/145‑1 (MQ=255)                                                                                                              ccGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCgg                                <  5:100631/149‑1 (MQ=255)                                                                                                                  gCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCt                            <  5:367645/149‑1 (MQ=255)                                                                                                                    tGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTgg                          >  3:20600/1‑149 (MQ=255)                                                                                                                    tGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTgg                          >  5:187370/1‑149 (MQ=255)                                                                                                                            gTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGt                  <  7:315741/149‑1 (MQ=255)                                                                                                                            gTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGt                  >  8:183334/1‑149 (MQ=255)                                                                                                                               gAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGa               <  2:221940/149‑1 (MQ=255)                                                                                                                                        cACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGccaggcagtggacaacctcgacccggaccagcccggcgttcaactggatgaaagcggcccacgcgaggtgcgttacgctgccgtggccttcaacgccctgcaggc               >  6:111265‑M2/1‑35 (MQ=255)                                                                                                                                        cACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGccaggcagtggacaacctcgacccggaccagcccggcgttcaactggatgaaagcggcccacgcgaggtgcgttacgctgccgtggccttcaacgccctgcaggc               <  5:111265‑M2/140‑106 (MQ=255)                                                                                                                                        cACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTg      <  4:288088/149‑1 (MQ=255)                                                                                                                                        cACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTg      <  1:134777/149‑1 (MQ=255)                                                                                                                                           tGCCTGGGCCAGACGGGTTAGCGGGCCGATGGccaggcagtggacaacctcgacccggaccagcccggcgttcaactggatgaaagcggcccacgcgaggtgcgttacgctgccgtggccttcaacgccctgcaggcgcgcattgctgc   <  4:221635‑M2/149‑118 (MQ=255)                                                                                                                                            gCCTGGccatcggcccgctaacccgtctggcccaggcagtggacaacctcgacccggaccagcccggcgttcaactggatgaaagcggcccacgcgaggtgcgttacgctgccgtggccttcaacgccctgcaggcgcgcattgctgcc  >  1:104045‑M1/1‑6 (MQ=255)                                                                                                                                                 |                                                                                                                                                CAGCAACTGCATGCGTTCCTTGAGGTGGGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGC  >  NC_002947/2747082‑2747369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.