New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2747226	34 (0.580)	4 (0.070)	4/246	NT	10.1%	coding (543/1287 nt)	PP_2402	sensor histidine kinase
	?	NC_002947	= 2747251	39 (0.700)					coding (518/1287 nt)	PP_2402	sensor histidine kinase

GGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCC  >  NC_002947/2747109‑2747394                                                                                                                                               |                                                                                                                                                ggCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGccaggc                                                                                                                                           >  1:104045‑M2/1‑143 (MQ=255)      caATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGTGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTAcc                                                                                                                                      >  6:148937/1‑149 (MQ=255)             cgcCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCgccagcc                                                                                                                               <  6:212901/149‑1 (MQ=255)                   cAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTa                                                                                                                          <  8:149360/148‑1 (MQ=255)                     gggCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTacac                                                                                                                       <  5:3014/149‑1 (MQ=255)                                 ccACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAacagcaca                                                                                                           <  4:316954/149‑1 (MQ=255)                                   aaggCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAacagcacagc                                                                                                         >  6:367645/3‑149 (MQ=255)                                       cAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCAcagccagc                                                                                                     <  5:148937/149‑1 (MQ=255)                                                gCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACacagcaa                                                                                                                  >  3:172460/1‑127 (MQ=255)                                                gCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACacagcaa                                                                                                                  <  4:172460/127‑1 (MQ=255)                                                     tCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAAAAGCACAGCCAGCTGAATCAGCAGcac                                                                                       >  6:242919/1‑149 (MQ=255)                                                       gcgTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGcacca                                                                                     >  3:288088/1‑149 (MQ=255)                                                            ggCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACgg                                                                                  <  7:80252/147‑1 (MQ=255)                                                            ggCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACgg                                                                                  >  8:80252/1‑147 (MQ=255)                                                                    tCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACg                                                                        >  4:19205/1‑149 (MQ=255)                                                                       tCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGc                                                                     >  1:221940/1‑149 (MQ=255)                                                                        ccAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGc                                                                     >  8:315741/1‑148 (MQ=255)                                                                           gTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTAcc                                                                 >  2:134777/1‑149 (MQ=255)                                                                                 cGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCgg                                                               <  6:328400/145‑1 (MQ=255)                                                                                 cGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCgg                                                               >  5:328400/1‑145 (MQ=255)                                                                                   ccGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCgg                                                         <  5:100631/149‑1 (MQ=255)                                                                                       gCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCt                                                     <  5:367645/149‑1 (MQ=255)                                                                                         tGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTgg                                                   >  3:20600/1‑149 (MQ=255)                                                                                         tGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTgg                                                   >  5:187370/1‑149 (MQ=255)                                                                                                 gTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGt                                           <  7:315741/149‑1 (MQ=255)                                                                                                 gTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGt                                           >  8:183334/1‑149 (MQ=255)                                                                                                    gAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGa                                        <  2:221940/149‑1 (MQ=255)                                                                                                             cACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGccaggcagtggacaacctcgacccggaccagcccggcgttcaactggatgaaagcggcccacgcgaggtgcgttacgctgccgtggccttcaacgccctgcaggc                                        <  5:111265‑M2/140‑106 (MQ=255)                                                                                                             cACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGccaggcagtggacaacctcgacccggaccagcccggcgttcaactggatgaaagcggcccacgcgaggtgcgttacgctgccgtggccttcaacgccctgcaggc                                        >  6:111265‑M2/1‑35 (MQ=255)                                                                                                             cACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTg                               <  1:134777/149‑1 (MQ=255)                                                                                                             cACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTg                               <  4:288088/149‑1 (MQ=255)                                                                                                                tGCCTGGGCCAGACGGGTTAGCGGGCCGATGGccaggcagtggacaacctcgacccggaccagcccggcgttcaactggatgaaagcggcccacgcgaggtgcgttacgctgccgtggccttcaacgccctgcaggcgcgcattgctgc                            <  4:221635‑M2/149‑118 (MQ=255)                                                                                                                           gACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGc                  >  8:14623/1‑148 (MQ=255)                                                                                                                              gggTTAGCGGGCCGATGGccaggcagtggacaacctcgacccggaccagcccggcgttcaactggatgaaagcggcccacgcgaggtgcgttacgctgccgtggccttcaacgccctgcaggcgcgcattgctgcccacctcaaggaac              >  3:221635‑M2/1‑18 (MQ=255)                                                                                                                              gggTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGc              >  1:240195/1‑149 (MQ=255)                                                                                                                                 ttAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCtt            >  1:196563/1‑148 (MQ=255)                                                                                                                                  tAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCtt            >  1:7429/1‑147 (MQ=255)                                                                                                                                   aGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCa          <  5:242919/148‑1 (MQ=255)                                                                                                                                    gCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAg         <  2:7429/148‑1 (MQ=255)                                                                                                                                      gggCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAg                                 >  1:4037/1‑122 (MQ=255)                                                                                                                                      gggCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAg                                 <  2:4037/122‑1 (MQ=255)                                                                                                                                        gCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTgcg    >  3:300048/1‑149 (MQ=255)                                                                                                                                         ccGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCg                    >  6:340440/1‑132 (MQ=255)                                                                                                                                         ccGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCg                    <  5:340440/132‑1 (MQ=255)                                                                                                                                          cGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGcc  >  4:270491/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                GGCAGCAATGCGCGCCTGCAGGGCGTTGAAGGCCACGGCAGCGTAACGCACCTCGCGTGGGCCGCTTTCATCCAGTTGAACGCCGGGCTGGTCCGGGTCGAGGTTGTCCACTGCCTGGGCCAGACGGGTTAGCGGGCCGATGGCCAGGCGTACCGCCAGCCAGGTACACAGCAACAGCACAGCCAGCTGAATCAGCAGCACCACGGGCAACCAACGGGCTACCGGGACCGGTGCTGGCGTCACGTCGATGGTCAGTGGCGCGCCGTCGGCCAGCTTCAGGTGCGCC  >  NC_002947/2747109‑2747394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.