New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2778210	52 (0.880)	3 (0.050)	3/248	NT	5.6%	coding (176/831 nt)	PP_2430	AraC family transcriptional regulator
	?	NC_002947	= 2778237	52 (0.920)					coding (149/831 nt)	PP_2430	AraC family transcriptional regulator

GCAGGCTGTCGCCCGGCGCGTGCTCGTACAGCGCGCGCAGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2778061‑2778210 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccGCCGGGTACGCCATCGCAGCACGCCGGGGCAGGTATTCTTACTTGAGCCTGGCGACATCCACGATGGCCTGGCGCCCACCGAAGAAGGCTTCACCTATT  <  NC_002947/2778237‑2778139                                                                                                                                                                                                                                                           GCAGGCTGTCGCCCGGCGCGTGCTCGTACAGCGCGCGCAGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGC                                                                                                      <  1:229198/149‑1                                   GCGCAGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCGCCGGGTACGCCATCGCAGCACGCCGGGGCAGG                                                                    >  2:208104/1‑149                                     GCAGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCGCCGGGTACGCCATCGCAGCACGCCGGGGCAGGTA                                                                  <  4:81799/149‑1                                        GCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCGCCGGGTACCCCATCGCAGCACGCCGGGGCAGGTATTC                                                               <  1:208104/149‑1                                                                                                                                                  CTGCCGCCGGGTACGCCATCGCAGCACGCCGGGGCAGGTATTCTTACTTGAGCCTGGCGACATCCACGATGGCCTGGCGCCCACCGAAGAAGGCTTCACCTATT  >  2:80953/1‑104                                                                                                                                                  CTGCCGCCGGGTACGCCATCGCAGCACGCCGGGGCAGGTATTCTTACTTGAGCCTGCCGACATCCACGATGGCCTGGCGCCCACCGAAGAAGGCTTCACCTATT  <  1:80953/104‑1                                                                                                                                                                                                                                                           GCAGGCTGTCGCCCGGCGCGTGCTCGTACAGCGCGCGCAGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2778061‑2778210 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccGCCGGGTACGCCATCGCAGCACGCCGGGGCAGGTATTCTTACTTGAGCCTGGCGACATCCACGATGGCCTGGCGCCCACCGAAGAAGGCTTCACCTATT  <  NC_002947/2778237‑2778139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.