New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2778210	52 (0.880)	3 (0.050)	3/248	NT	5.6%	coding (176/831 nt)	PP_2430	AraC family transcriptional regulator
	?	NC_002947	= 2778237	52 (0.920)					coding (149/831 nt)	PP_2430	AraC family transcriptional regulator

AGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATGCCGGTGTCGGCGTCCTGTTTGAAGTCGATCCAGTTGCTCAT  >  NC_002947/2778099‑2778385                                                                                                                                           |                                                                                                                                                       aGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGaa                                                                                                                                              >  7:260451/1‑149 (MQ=255)  gCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑c                                                                                                                                            <  4:53351/149‑1 (MQ=255)      ttGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGtt                                                                                                                                                 >  5:69247/1‑141 (MQ=255)      ttGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGtt                                                                                                                                                 <  6:69247/141‑1 (MQ=255)      ttGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑ctgct                                                                                                                                        <  5:335593/149‑1 (MQ=255)         gTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCa                                                                                                                                     >  3:68300/1‑149 (MQ=255)                    cGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCg                                                                                                                          <  5:155577/149‑1 (MQ=255)                       gCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGt                                                                                                                        <  6:355192/148‑1 (MQ=255)                       gCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGAACGCCCTGCTCGGt                                                                                                                        >  5:355192/1‑148 (MQ=255)                           cAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCAc                                                                                                                     <  6:326391/147‑1 (MQ=255)                           cAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGc                                                                                                                   >  3:289733/1‑149 (MQ=255)                             ggTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGcc                                                                                                                  >  5:331429/1‑148 (MQ=255)                                 cAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGAcc                                                                                                              <  2:334043/148‑1 (MQ=255)                                    cGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGa                                                                                                          <  6:368728/149‑1 (MQ=255)                                        gAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCt                                                                                                      >  2:268023/1‑149 (MQ=255)                                         aaTAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGGCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCggcag                                                                                                                                                   <  1:80953‑M2/104‑6 (MQ=255)                                         aaTAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCggcag                                                                                                                                                   >  2:80953‑M2/1‑99 (MQ=255)                                             ggTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCg                                                                                                  <  4:68300/148‑1 (MQ=255)                                             ggTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGt                                                                                                 <  5:299957/149‑1 (MQ=255)                                              gTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTAAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTg                                                                                                >  1:274100/1‑149 (MQ=255)                                               tGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGCCCAGGAAGCTGTCGTGc                                                                                               >  6:88220/1‑149 (MQ=255)                                               tGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGt                                                                                                 >  6:41975/1‑147 (MQ=255)                                               tGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGt                                                                                                 <  5:41975/147‑1 (MQ=255)                                               tGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGc                                                                                               >  6:45886/1‑149 (MQ=255)                                                 aaGCCTTCTTCGGTGGGCGCCAGTCCATCGTGGTTGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGATTGCTGCGATGGCGTACCGGGCGGCAGTTGAA‑CTGCTGGAGGCCGTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCa                                                                                             <  5:88220/149‑1 (MQ=255)                                                 aaGCCTTCTTCGGGGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAATCTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGc                                                                                               <  1:268023/148‑1 (MQ=255)                                                   gCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGt                                                                                           <  6:331429/149‑1 (MQ=255)                                                         ttcGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGt                                                                                     >  2:140750/1‑149 (MQ=255)                                                           cGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTggggg                                                                                      <  7:153325/146‑1 (MQ=255)                                                           cGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTggggg                                                                                      <  5:45886/146‑1 (MQ=255)                                                              tGGGCGCCAGG‑CATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAg                                                                                                        >  2:209451/1‑124 (MQ=255)                                                              tGGGCGCCAGG‑CATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAg                                                                                                        <  1:209451/124‑1 (MQ=255)                                                                   gcCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATa                                                                                 >  4:122199/1‑143 (MQ=255)                                                                   gcCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATa                                                                                 <  3:122199/143‑1 (MQ=255)                                                                     cAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGa                                                                                                                <  6:200123/110‑1 (MQ=255)                                                                     cAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGa                                                                                                                >  5:200123/1‑110 (MQ=255)                                                                        gCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGa                                                                      <  1:140750/149‑1 (MQ=255)                                                                             cGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTc                                                                                                                       <  5:341693/95‑1 (MQ=255)                                                                             cGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTc                                                                                                                       >  6:341693/1‑95 (MQ=255)                                                                              gTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAAt                                                                <  8:260451/149‑1 (MQ=255)                                                                                 gATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATgcg                                                             >  3:282110/1‑149 (MQ=255)                                                                                              tCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGcc                                                                                                                  >  7:301036/1‑83 (MQ=255)                                                                                              tCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGcc                                                                                                                  <  8:301036/83‑1 (MQ=255)                                                                                              tCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTc                                               >  7:258589/1‑149 (MQ=255)                                                                                                aaGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTc                                               <  8:258589/147‑1 (MQ=255)                                                                                                  gTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATg                                           >  8:177411/1‑149 (MQ=255)                                                                                                      gAATACCTGCCCCGGCGTGCTGCGATGGGGTACCCGGCggcaggtattcttacttgagcctggcgacatccacgatggcctggcgcccaccgaagaaggcttcacctattcgacgctgtacctggagcccgcctggctcgaccaacagc                                         <  1:208104‑M2/149‑112 (MQ=255)                                                                                                         tACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCggcaggtattcttacttgagcctggcgacatccacgatggcctggcgcccaccgaagaaggcttcacctattcgacgctgtacctggagcccgcctggctcgaccaacagctgc                                      <  4:81799‑M2/149‑115 (MQ=255)                                                                                                           ccTGCCCCGGCGTGCTGCGATGGCGTACCCGGCggcaggtattcttacttgagcctggcgacatccacgatggcctggcgcccaccgaagaaggcttcacctattcgacgctgtacctggagcccgcctggctcgaccaacagctgcgc                                    >  2:208104‑M2/1‑33 (MQ=255)                                                                                                           ccTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATGCCGGTGTCg                                  >  1:231028/1‑149 (MQ=255)                                                                                                            cTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATGCCGGTGTCgg                                 >  6:55437/1‑149 (MQ=255)                                                                                                            cTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATGCCGGTGTCgg                                 >  7:65944/1‑149 (MQ=255)                                                                                                                cccGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GCCTCGATg                                           >  1:322972/1‑135 (MQ=255)                                                                                                                cccGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATg                                           <  2:322972/135‑1 (MQ=255)                                                                                                                cccGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATGCCGGTGTCGGCGTc                             >  3:55059/1‑149 (MQ=255)                                                                                                                cccGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATGCCGGTGTCGGCGTc                             <  4:289733/149‑1 (MQ=255)                                                                                                                          tgcGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGT‑GGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATGCCGGTGTCGGCGTCCTGTTTGAAGt                  >  2:82823/1‑149 (MQ=255)                                                                                                                            cGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACCAGACTCGATGCCGGTGTCGGCGTCCTGTTTGaa                    <  1:231163/147‑1 (MQ=255)                                                                                                                            cGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATGCCGGTGTCGGCGTCCTGTTTGAAg                   <  5:128506/147‑1 (MQ=255)                                                                                                                            cGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATGCCGGTGTCGGCGTCCTGTTTGAAGt                  <  4:282110/148‑1 (MQ=255)                                                                                                                                           cggcAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATGCCGGTGTCGGCGTCCTGTTTGAAGTCGATCCAGTTGCTCAt  >  2:243608/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                       AGCTGTTGGTCGAGCCAGGCGGGCTCCAGGTACAGCGTCGAATAGGTGAAGCCTTCTTCGGTGGGCGCCAGGCCATCGTGGATGTCGCCAGGCTCAAGTAAGAATACCTGCCCCGGCGTGCTGCGATGGCGTACCCGGCGGCAGTTGAA‑CTGCTGCACGCCCTGCTCGGTCACGCCGACCAGGAAGCTGTCGTGCCAGTGGGGGTCATAGGCATGGCCGACAAAATGCGCACGGACC‑GACTCGATGCCGGTGTCGGCGTCCTGTTTGAAGTCGATCCAGTTGCTCAT  >  NC_002947/2778099‑2778385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.