New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2786752	49 (0.830)	5 (0.090)	5/240	NT	9.0%	intergenic (‑84/‑238)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit
	?	NC_002947	= 2786780	55 (1.000)					intergenic (‑112/‑210)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit

CATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGT‑GTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2786597‑2786752 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtatcacGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACATTCAAGGAGGGGCTCATGACAGCTCTGCAATCATTCCTCACAACACCT  <  NC_002947/2786780‑2786636                                                                                                                                                                                                                                                                                                                CATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCC                                                                                                                                                           >  1:71627/1‑149                      GGCGCTGGTACCGATGACAGGT‑CATGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCACCATGAATGTCGACCTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCACCCGTCATAGGCGCCCGGAATCACGGGCAAACGGGTC                                                                                                                                      >  6:74341/1‑148                                           T‑GTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATAC                                                                                                                <  3:2562/149‑1                                              TTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCG                                                                                                              <  5:74341/149‑1                                                GTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGG                                                                                                             <  1:22435/148‑1                                                         GATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCATGT                                                                                                                     >  8:113109/1‑131                                                                                                                                                        TATCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACATTCAAGGAGGGGCTCATGACAGCTCTACAATCATTCCTCACAACAC    <  8:323382/149‑1                                                                                                                                                          TCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAACCCGCAATGTCGGATCACTCTTGCCTTGCAACGTCGACATTCAAGGAGGGGCTCATGACACCTAAGCAATCATTCCTCACAACACCT  >  8:217382/1‑149                                                                                                                                                                                                                                                                                                                CATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGT‑GTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2786597‑2786752 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtatcacGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACATTCAAGGAGGGGCTCATGACAGCTCTGCAATCATTCCTCACAACACCT  <  NC_002947/2786780‑2786636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.