New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3227945 =	44 (0.750)	3 (0.050)	3/244	NT	6.7%	coding (784/1386 nt)	PP_2828	hypothetical protein
	?	NC_002947	3227981 =	42 (0.750)					coding (820/1386 nt)	PP_2828	hypothetical protein

TTCAAGCAAGTGCGGCAACAGGTCATCAATAGCGATCAGCCGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3227989‑3227945 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcacTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCGGGC  >  NC_002947/3227981‑3228128                                                                                                                                                                                                   TTCAAGCAAGTGCGGCAACAGGTCATCAATAGCGATCAGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCA                                                >  7:114702/1‑147     AGCAAGTGCGGCAACAGGTCATCAATAGCGATCAGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCAC                                                    <  3:304123/139‑1     AGCAAGTGCGGCAACAGGTCATCAATAGCGATCAGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCAC                                                    >  4:304123/1‑139                                         CGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCC      >  3:180444/1‑149                                           CACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCGG    <  7:239205/149‑1                                           CACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCGG    <  8:327988/149‑1                                            ACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCGGG   >  6:269679/1‑149                                             CTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCGGGC  >  6:144642/1‑149                                                                                                                                                                                                   TTCAAGCAAGTGCGGCAACAGGTCATCAATAGCGATCAGCCGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3227989‑3227945 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcacTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCGGGC  >  NC_002947/3227981‑3228128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.