New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3227945 =	44 (0.750)	3 (0.050)	3/244	NT	6.7%	coding (784/1386 nt)	PP_2828	hypothetical protein
	?	NC_002947	3227981 =	42 (0.750)					coding (820/1386 nt)	PP_2828	hypothetical protein

CAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCGGGC  >  NC_002947/3227834‑3228128                                                                                                                                                     |                                                                                                                                                    cAGTGCCTGGCGGCGCTGGCCCAAGGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCAct                                                                                                                                                     >  1:193775/1‑149 (MQ=255) cAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCActt                                                                                                                                                    >  8:189941/1‑149 (MQ=255)           tgccgtggctagcgagtcgacgaattcggacagcggcaaagcatccgcagccgtctcgaagtgacaacccagcatcgcgtcaagctgctgctcttcaagcaaGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGaa                                                                                                                                             >  7:114702‑M1/103‑147 (MQ=255)               gtggctagcgagtcgacgaattcggacagcggcaaagcatccgcagccgtctcgaagtgacaacccagcatcgcgtcaagctgctgctcttcaagcaaGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCActtgct                                                                                                                                                 <  3:304123‑M1/41‑1 (MQ=255)               gtggctagcgagtcgacgaattcggacagcggcaaagcatccgcagccgtctcgaagtgacaacccagcatcgcgtcaagctgctgctcttcaagcaaGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCActtgct                                                                                                                                                 >  4:304123‑M1/99‑139 (MQ=255)                  ggCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGagcagcagc                                                                                                                                   >  7:224449/1‑149 (MQ=255)                   gCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGagcagcagc                                                                                                                                   <  4:41985/148‑1 (MQ=255)                     ccAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCtt                                                                                                                                 >  2:122902/1‑148 (MQ=255)                       aa‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGAc                                                                                                                              <  2:193775/149‑1 (MQ=255)                                   cGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTggg                                                                                                                   <  4:1566/149‑1 (MQ=255)                                     aTTGCACGGTGCTGTTGGGGGCGCAGCGGGTGGTCAGCACGATCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGtt                                                                                                                 <  5:333043/149‑1 (MQ=255)                                      ttGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTg                                                                                                                <  7:189941/149‑1 (MQ=255)                                        gCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCGGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGt                                                                                                               <  3:241169/148‑1 (MQ=255)                                         cACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGagcagcagc                                                                                                                                   <  2:160920/127‑1 (MQ=255)                                         cACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGagcagcagc                                                                                                                                   >  1:160920/1‑127 (MQ=255)                                            ggTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTg                                                                                                                     >  7:73410/1‑138 (MQ=255)                                            ggTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTg                                                                                                                     <  8:73410/138‑1 (MQ=255)                                            ggTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATGGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACtt                                                                                                          <  8:112960/149‑1 (MQ=255)                                                     gggggCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGc                                                                                                 >  6:243152/1‑149 (MQ=255)                                                                  gtggtCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTg                                                                                    <  6:117954/149‑1 (MQ=255)                                                                   tggtCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGc                                                                                   <  5:243152/149‑1 (MQ=255)                                                                      tCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGa                                                                                                                               >  8:257676/1‑102 (MQ=255)                                                                      tCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGa                                                                                                                               <  7:257676/102‑1 (MQ=255)                                                                       cAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCAc                                                                                                            >  6:24282/1‑120 (MQ=255)                                                                       cAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCAc                                                                                                            >  6:18927/1‑120 (MQ=255)                                                                       cAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCAc                                                                                                            <  5:18927/120‑1 (MQ=255)                                                                       cAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCAc                                                                                                            <  5:24282/120‑1 (MQ=255)                                                                               gCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGa                                                                                           <  8:289074/129‑1 (MQ=255)                                                                                  ggTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATtcg                                                                    >  4:203409/1‑149 (MQ=255)                                                                                    ttCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATtcgtc                                                                  <  8:224449/149‑1 (MQ=255)                                                                                    ttCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATtcgtc                                                                  >  6:184466/1‑149 (MQ=255)                                                                                     tCCAGGCGCAGTACCGGCGCGTTCGCAGTTGCGGCTGATCGCTATTGATGACATTTTGCCGCACTTGCTTGAAGAGCAGCAGATTGACGCTATGCTGGGTTGTCACTTCGATACTGCTGCGGATGCTTTGCCGCTGTCCGAATtcgtc                                                                  <  1:288665/148‑1 (MQ=255)                                                                                       cAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGa                                                                <  3:203409/148‑1 (MQ=255)                                                                                           cgcCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGc                                                           >  8:155775/1‑149 (MQ=255)                                                                                                   cGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACg                                                   >  8:296872/1‑149 (MQ=255)                                                                                                     gAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACgg                                                  >  8:239205/1‑148 (MQ=255)                                                                                                        ttcaagcaagtgcggcaacaggtcatcaatagcgatcagccgcacTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGca                                                >  7:114702‑M2/46‑147 (MQ=255)                                                                                                            agcaagtgcggcaacaggtcatcaatagcgatcagccgcacTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCAc                                                    >  4:304123‑M2/42‑139 (MQ=255)                                                                                                            agcaagtgcggcaacaggtcatcaatagcgatcagccgcacTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCAc                                                    <  3:304123‑M2/98‑1 (MQ=255)                                                                                                                          aTCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCAc                                                                                                            <  5:245374/69‑1 (MQ=255)                                                                                                                          aTCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCAc                                                                                                            >  6:245374/1‑69 (MQ=255)                                                                                                                          aTCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCgg                                                                                            <  1:15100/85‑1 (MQ=255)                                                                                                                          aTCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCgg                                                                                            >  2:15100/1‑85 (MQ=255)                                                                                                                               tATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGc                                                                                              >  1:146725/1‑78 (MQ=255)                                                                                                                               tATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGc                                                                                              <  2:146725/78‑1 (MQ=255)                                                                                                                                aTTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCga                                                                                                       >  3:212025/1‑68 (MQ=255)                                                                                                                                aTTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCga                                                                                                       <  4:212025/68‑1 (MQ=255)                                                                                                                                   gatgaCCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCt                   >  5:117737/1‑149 (MQ=255)                                                                                                                                    atgaCCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCt                   <  7:155775/148‑1 (MQ=255)                                                                                                                                       aCCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGa                <  1:122902/148‑1 (MQ=255)                                                                                                                                         cTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGcc             <  5:184466/149‑1 (MQ=255)                                                                                                                                          tGTTGCCGCACTTGCTTGAAGAGCAGCAGCTAGACGCGAAGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCAAAGCTGAATGAACTGCGCGCCCGCAGTCTGGAGCCg            >  1:355646/1‑149 (MQ=255)                                                                                                                                           gTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCt                                                                                                <  5:256133/64‑1 (MQ=255)                                                                                                                                           gTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCt                                                                                                >  6:256133/1‑64 (MQ=255)                                                                                                                                                cgcacTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGcc      >  3:180444‑M2/6‑149 (MQ=255)                                                                                                                                                  cacTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCgg    <  7:239205‑M2/146‑1 (MQ=255)                                                                                                                                                  cacTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCgg    <  8:327988‑M2/146‑1 (MQ=255)                                                                                                                                                   acTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCggg   >  6:269679‑M2/3‑149 (MQ=255)                                                                                                                                                    cTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCGGGc  >  6:144642‑M2/2‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGGCACAGCTGCATGAACTGCGCGCCCGCAGTCTGGAGCCGCTGGCCGGGC  >  NC_002947/3227834‑3228128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.