New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3227945 =	44 (0.750)	3 (0.050)	3/244	NT	6.7%	coding (784/1386 nt)	PP_2828	hypothetical protein
	?	NC_002947	3227981 =	42 (0.750)					coding (820/1386 nt)	PP_2828	hypothetical protein

CGCCTGGCCGGCGTGCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGG  >  NC_002947/3227798‑3228080                                                                                                                                                     |                                                                                                                                        gcccggccagcggctccagactgcgggcgcgcagttcatgcagctgtgccgtggctagcgagtcgacgaattcggacagcggcaaagcatccgcagccgtctcgaagtgacaacccagcatcgcgtcaagctgctgctcttcaagcaag                                                                                                                                         >  6:144642‑M1/149‑149 (MQ=255)  cccggccagcggctccagactgcgggcgcgcagttcatgcagctgtgccgtggctagcgagtcgacgaattcggacagcggcaaagcatccgcagccgtctcgaagtgacaacccagcatcgcgtcaagctgctgctcttcaagcaaGt                                                                                                                                        >  6:269679‑M1/148‑149 (MQ=255)   ccggccagcggctccagactgcgggcgcgcagttcatgcagctgtgccgtggctagcgagtcgacgaattcggacagcggcaaagcatccgcagccgtctcgaagtgacaacccagcatcgcgtcaagctgctgctcttcaagcaaGTg                                                                                                                                       <  7:239205‑M1/3‑1 (MQ=255)   ccggccagcggctccagactgcgggcgcgcagttcatgcagctgtgccgtggctagcgagtcgacgaattcggacagcggcaaagcatccgcagccgtctcgaagtgacaacccagcatcgcgtcaagctgctgctcttcaagcaaGTg                                                                                                                                       <  8:327988‑M1/3‑1 (MQ=255)     ggccagcggctccagactgcgggcgcgcagttcatgcagctgtgccgtggctagcgagtcgacgaattcggacagcggcaaagcatccgcagccgtctcgaagtgacaacccagcatcgcgtcaagctgctgctcttcaagcaaGTGCg                                                                                                                                     >  3:180444‑M1/145‑149 (MQ=255)          ggCGTGCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGAt                                                                                                                               <  4:129005/149‑1 (MQ=255)                cATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTa                                                                                                                          <  3:32820/148‑1 (MQ=255)                cATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTAt                                                                                                                         <  8:166182/149‑1 (MQ=255)                     cccGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATtgatg                                                                                                                    <  8:34156/149‑1 (MQ=255)                     cccGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAA‑AGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATGGCTATtgatg                                                                                                                    >  3:1566/1‑149 (MQ=255)                                     cAGTGCCTGGCGGCGCTGGCCCAAGGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCAct                                                                                                     >  1:193775/1‑149 (MQ=255)                                     cAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTAtt                                                                                                                        <  2:198354/129‑1 (MQ=255)                                     cAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTAtt                                                                                                                        >  1:198354/1‑129 (MQ=255)                                     cAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCActt                                                                                                    >  8:189941/1‑149 (MQ=255)                                               tgccgtggctagcgagtcgacgaattcggacagcggcaaagcatccgcagccgtctcgaagtgacaacccagcatcgcgtcaagctgctgctcttcaagcaaGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGaa                                                                                             >  7:114702‑M1/103‑147 (MQ=255)                                                   gtggctagcgagtcgacgaattcggacagcggcaaagcatccgcagccgtctcgaagtgacaacccagcatcgcgtcaagctgctgctcttcaagcaaGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCActtgct                                                                                                 >  4:304123‑M1/99‑139 (MQ=255)                                                   gtggctagcgagtcgacgaattcggacagcggcaaagcatccgcagccgtctcgaagtgacaacccagcatcgcgtcaagctgctgctcttcaagcaaGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCActtgct                                                                                                 <  3:304123‑M1/41‑1 (MQ=255)                                                      ggCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGagcagcagc                                                                                   >  7:224449/1‑149 (MQ=255)                                                       gCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGagcagcagc                                                                                   <  4:41985/148‑1 (MQ=255)                                                         ccAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCtt                                                                                 >  2:122902/1‑148 (MQ=255)                                                           aa‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGAc                                                                              <  2:193775/149‑1 (MQ=255)                                                                      ccGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGc                                                                                                           >  1:338055/1‑110 (MQ=255)                                                                      ccGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGc                                                                                                           <  2:338055/110‑1 (MQ=255)                                                                       cGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTggg                                                                   <  4:1566/149‑1 (MQ=255)                                                                         aTTGCACGGTGCTGTTGGGGGCGCAGCGGGTGGTCAGCACGATCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGtt                                                                 <  5:333043/149‑1 (MQ=255)                                                                          ttGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTg                                                                <  7:189941/149‑1 (MQ=255)                                                                            gCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCGGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGt                                                               <  3:241169/148‑1 (MQ=255)                                                                             cACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGa                                                                                                                                <  5:345695/82‑1 (MQ=255)                                                                             cACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGa                                                                                                                                >  6:345695/1‑82 (MQ=255)                                                                             cACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGagcagcagc                                                                                   >  1:160920/1‑127 (MQ=255)                                                                             cACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGagcagcagc                                                                                   <  2:160920/127‑1 (MQ=255)                                                                                ggTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTg                                                                     >  7:73410/1‑138 (MQ=255)                                                                                ggTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTg                                                                     <  8:73410/138‑1 (MQ=255)                                                                                ggTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATGGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACtt                                                          <  8:112960/149‑1 (MQ=255)                                                                                         gggggCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGc                                                 >  6:243152/1‑149 (MQ=255)                                                                                                      gtggtCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTg                                    <  6:117954/149‑1 (MQ=255)                                                                                                       tggtCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGc                                   <  5:243152/149‑1 (MQ=255)                                                                                                          tCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGa                                                                               >  8:257676/1‑102 (MQ=255)                                                                                                          tCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGa                                                                               <  7:257676/102‑1 (MQ=255)                                                                                                           cAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCAc                                                            >  6:24282/1‑120 (MQ=255)                                                                                                           cAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCAc                                                            <  5:18927/120‑1 (MQ=255)                                                                                                           cAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCAc                                                            <  5:24282/120‑1 (MQ=255)                                                                                                           cAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCAc                                                            >  6:18927/1‑120 (MQ=255)                                                                                                                   gCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGa                                           <  8:289074/129‑1 (MQ=255)                                                                                                                      ggTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATtcg                    >  4:203409/1‑149 (MQ=255)                                                                                                                        ttCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATtcgtc                  >  6:184466/1‑149 (MQ=255)                                                                                                                        ttCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATtcgtc                  <  8:224449/149‑1 (MQ=255)                                                                                                                         tCCAGGCGCAGTACCGGCGCGTTCGCAGTTGCGGCTGATCGCTATTGATGACATTTTGCCGCACTTGCTTGAAGAGCAGCAGATTGACGCTATGCTGGGTTGTCACTTCGATACTGCTGCGGATGCTTTGCCGCTGTCCGAATtcgtc                  <  1:288665/148‑1 (MQ=255)                                                                                                                           cAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGa                <  3:203409/148‑1 (MQ=255)                                                                                                                               cgcCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGc           >  8:155775/1‑149 (MQ=255)                                                                                                                                       cGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACg   >  8:296872/1‑149 (MQ=255)                                                                                                                                         gAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACgg  >  8:239205/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                        CGCCTGGCCGGCGTGCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAA‑GGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGAGCGTGCGCCGGTGCGGCTGATCGCTATTGATGACCTGTTGCCGCACTTGCTTGAAGAGCAGCAGCTTGACGCGATGCTGGGTTGTCACTTCGAGACGGCTGCGGATGCTTTGCCGCTGTCCGAATTCGTCGACTCGCTAGCCACGG  >  NC_002947/3227798‑3228080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.