| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3622804 = | 38 (0.650) | 3 (0.050) | 3/242 | NT | 7.5% | coding (1249/1344 nt) | PP_3194 | hypothetical protein |
| ? | NC_002947 | 3622852 = | 38 (0.690) | coding (1201/1344 nt) | PP_3194 | hypothetical protein | |||||
GCGAGACGCTCGGCACCCTGGAACCGGGCAAACAGGCCGACCTGCTGGTGCTCGACGGTTCGCCCCTGGACGACATCCGCATCCTTCAAGACCGCGCTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3622956‑3622804‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgcctGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATGGGTTGCGGCGAA > NC_002947/3622852‑3622996 GCGAGACGCTCGGCACCCTGGAACCGGGCAAACAGGCCGACCTGCTGGTGCTCGACGGTTCGCCCCTGGACGACATCCGCATCCTTCAAGACCGCGCTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACC < 2:104723/149‑1 CGAGACGCTCGGCACCCTGGAACCGGGCAAACAGGCCGACCTGCTGGTGCTCGACGGTTCGCCCCTGGACGACATCCGCATCCTTCAAGACCGCGCTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCG > 2:125662/1‑149 GCTCGGCACCCTGGAACCGGGCAAACAGGCCGACCTGCTGGTGCTCGACGGTTCGCCCCTGGACGACATCCGCATCCTTCAAGACCGCGCTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTcc > 6:78425/1‑146 CAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGG > 7:233628/1‑138 CAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGG < 8:233628/138‑1 AGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTC > 3:34715/1‑149 CACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATGGGTTGCGG > 3:349112/1‑149 GCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATGGGTTGCGGCGAA < 3:305872/149‑1 CCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATGG < 2:340596/137‑1 CCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCAACAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATGG > 1:340596/1‑137 TGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCT < 1:265333/73‑1 TGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCT > 2:265333/1‑73 GCGAGACGCTCGGCACCCTGGAACCGGGCAAACAGGCCGACCTGCTGGTGCTCGACGGTTCGCCCCTGGACGACATCCGCATCCTTCAAGACCGCGCTCGGCTGCAGGCGGTGTACAAGGCCGGCGAGCCGGTACGGCTGCAACGCACCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3622956‑3622804‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgcctGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATGGGTTGCGGCGAA > NC_002947/3622852‑3622996 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |