New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3622804 =	38 (0.650)	3 (0.050)	3/242	NT	7.5%	coding (1249/1344 nt)	PP_3194	hypothetical protein
	?	NC_002947	3622852 =	38 (0.690)					coding (1201/1344 nt)	PP_3194	hypothetical protein

ATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATGGGTTGCGGCGAA  >  NC_002947/3622705‑3622996                                                                                                                                                    |                                                                                                                                                 aTGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGAGAATTTAAGTCCTAAACATGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCTTACCGGCTCGCCGGCCTTGTACACCGCATg                                                                                                                                                  >  6:261679/1‑148 (MQ=255)           cctggaaccgggcaaacaggccgacctgctggtgctcgacggttcgcccctggacgacatccgcatccttcaagaccgcgctcggctgcAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTg                                                                                                                                                  <  8:233628‑M1/49‑1 (MQ=255)           cctggaaccgggcaaacaggccgacctgctggtgctcgacggttcgcccctggacgacatccgcatccttcaagaccgcgctcggctgcAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTg                                                                                                                                                  >  7:233628‑M1/90‑138 (MQ=255)            cTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAgc                                                                                                                                         <  8:95827/146‑1 (MQ=255)            cTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAgc                                                                                                                                         >  7:95827/1‑146 (MQ=255)            cTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGcgcg                                                                                                                                      >  3:94538/1‑149 (MQ=255)            cTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGGGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGcgcg                                                                                                                                      <  5:261679/149‑1 (MQ=255)                aTTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCt                                                                                                                                  >  5:191107/1‑149 (MQ=255)                     ccGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGaa                                                                                                                              <  3:180466/148‑1 (MQ=255)                          ttCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGc                                                                                                                        >  7:192925/1‑149 (MQ=255)                            cGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCg                                                                                                                       <  4:94538/148‑1 (MQ=255)                             ggACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGa                                                                                                                     <  8:192925/149‑1 (MQ=255)                             ggACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGa                                                                                                                     <  1:162629/149‑1 (MQ=255)                              gACACGCGGTCGCGGGTGTAGATCTCGGTCCAATACATATAATTTAAAACAAACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGAt                                                                                                                    >  2:108636/1‑149 (MQ=255)                                      gTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCa                                                                                                            <  2:140080/149‑1 (MQ=255)                                      gTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCa                                                                                                            <  6:191107/149‑1 (MQ=255)                                                  gagGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGc                                                                                                       >  6:337398/1‑142 (MQ=255)                                                  gagGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGc                                                                                                       <  5:337398/142‑1 (MQ=255)                                                     gtcggtcCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTc                                                                                               >  4:54792/1‑147 (MQ=255)                                                          tcCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGACGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGACCCGTCGAGCAc                                                                                         >  5:308222/1‑148 (MQ=255)                                                                  aGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCt                                                                                                                                  <  3:47824/99‑1 (MQ=255)                                                                  aGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCt                                                                                                                                  >  4:47824/1‑99 (MQ=255)                                                                      aaTTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGcc                                                                            >  5:77997/1‑149 (MQ=255)                                                                      aaTTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGcc                                                                            >  3:175725/1‑149 (MQ=255)                                                                       aTTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCt                                                                           >  1:125662/1‑149 (MQ=255)                                                                          gAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGtt                                                                        >  3:142804/1‑149 (MQ=255)                                                                          gAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTCGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGtt                                                                        >  2:256243/1‑149 (MQ=255)                                                                             gTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGc                                                                     >  3:342703/1‑149 (MQ=255)                                                                                    acCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTc                                                              >  5:62903/1‑149 (MQ=255)                                                                                               gTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGa                                                   <  4:342703/149‑1 (MQ=255)                                                                                                ttGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCg                                                    >  6:240743/1‑147 (MQ=255)                                                                                                ttGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCg                                                    <  5:240743/147‑1 (MQ=255)                                                                                                ttGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAg                                                  >  8:322335/1‑149 (MQ=255)                                                                                                  ggAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGc                                                 >  6:78425‑M1/3‑148 (MQ=255)                                                                                                  gTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCg                                                >  1:158602/1‑149 (MQ=255)                                                                                                   tAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCg                                                >  4:305872/1‑148 (MQ=255)                                                                                                   caggcggtgtacaaggccggcgagccggtacggctgcaacgcaccgcctGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAgg                                                          <  8:233628‑M2/89‑1 (MQ=255)                                                                                                   caggcggtgtacaaggccggcgagccggtacggctgcaacgcaccgcctGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAgg                                                          >  7:233628‑M2/50‑138 (MQ=255)                                                                                                    aggcggtgtacaaggccggcgagccggtacggctgcaacgcaccgcctGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGtc                                              >  3:34715‑M2/49‑149 (MQ=255)                                                                                                       CGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTcg                                           >  2:125662‑M1/1‑149 (MQ=255)                                                                                                        GGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTcgc                                          <  2:104723‑M1/149‑1 (MQ=255)                                                                                                             gTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCcgcgc                                     >  3:237544/1‑149 (MQ=255)                                                                                                             gTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCcgcgc                                     >  7:170052/1‑149 (MQ=255)                                                                                                                    ccGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATc                               >  4:222045/1‑148 (MQ=255)                                                                                                                     cGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCaa                             <  8:170052/149‑1 (MQ=255)                                                                                                                         ccGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGt                         <  7:322335/149‑1 (MQ=255)                                                                                                                                     ccTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATgg             <  2:158602/149‑1 (MQ=255)                                                                                                                                       ttGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATGGGt           >  6:305699/1‑149 (MQ=255)                                                                                                                                            caccgcctGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATGGGTTgcgg      >  3:349112‑M2/9‑149 (MQ=255)                                                                                                                                                gcctGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATGGGTTGCGGCGaa  <  3:305872‑M2/145‑1 (MQ=255)                                                                                                                                                 cctGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATgg             <  2:340596‑M2/134‑1 (MQ=255)                                                                                                                                                 cctGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCAACAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATgg             >  1:340596‑M2/4‑137 (MQ=255)                                                                                                                                                   tGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCt                                                                           <  1:265333‑M2/72‑1 (MQ=255)                                                                                                                                                   tGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCt                                                                           >  2:265333‑M2/2‑73 (MQ=255)                                                                                                                                                    |                                                                                                                                                 ATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCGTCTCGCCGCGCGGCATCAAGCGTGCGCCGACATGGGTTGCGGCGAA  >  NC_002947/3622705‑3622996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.