New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3622804 =	38 (0.650)	3 (0.050)	3/242	NT	7.5%	coding (1249/1344 nt)	PP_3194	hypothetical protein
	?	NC_002947	3622852 =	38 (0.690)					coding (1201/1344 nt)	PP_3194	hypothetical protein

GGTCGCGACCGCCAGTTGCACTGCCAGTTCGAAGTTGAGCGTTGTCATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCG  >  NC_002947/3622659‑3622950                                                                                                                                                  |                                                                                                                                                   ttcgccgcaacccatgtcggcgcacgcttgatgccgcgcggcgagacgctcggcaccctggaaccgggcaaacaggccgacctgctggtgctcgacggttcgcccctggacgacatccgcatccttcaagaccgcgctcggctgcAGGc                                                                                                                                                 <  3:305872‑M1/4‑1 (MQ=255)     gcgACCGCCAGTTGCACTGCCAGTTCGAAGTTGAGCGTTGTCATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTg                                                                                                                                             <  2:99465/149‑1 (MQ=255)     ccgcaacccatgtcggcgcacgcttgatgccgcgcggcgagacgctcggcaccctggaaccgggcaaacaggccgacctgctggtgctcgacggttcgcccctggacgacatccgcatccttcaagaccgcgctcggctgcAGGCGGTg                                                                                                                                             >  3:349112‑M1/142‑149 (MQ=255)          cGCCAGTTGCACTGCCAGTTCGAAGTTGAGCGTTGTCATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGATCTCGGTCCAATTCATATAATTAAAATAAAAAACCTGCTTGGGGTTGTAGGCGGTGCGTTg                                                                                                                                        >  4:180466/1‑149 (MQ=255)            ccatgtcggcgcacgcttgatgccgcgcggcgagacgctcggcaccctggaaccgggcaaacaggccgacctgctgttgctcgacggttcgcccctggacgacatccgcatccttcaagaccgcgctcggctgcAgg                                                                                                                                                  >  1:340596‑M1/135‑137 (MQ=255)            ccatgtcggcgcacgcttgatgccgcgcggcgagacgctcggcaccctggaaccgggcaaacaggccgacctgctggtgctcgacggttcgcccctggacgacatccgcatccttcaagaccgcgctcggctgcAgg                                                                                                                                                  <  2:340596‑M1/3‑1 (MQ=255)               gTTGCACTGCCAGTTCGAAGTTGAGCGTTGTCATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGcc                                                                                                                                   <  8:350814/149‑1 (MQ=255)               gTTGCACTGCCAGTTCGAAGTTGAGCGTTGTCATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGAGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGcc                                                                                                                                   >  2:162629/1‑149 (MQ=255)                               gAAGTTGAGCGTTGTCATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGc                                                                                                                   >  7:129283/1‑149 (MQ=255)                                 aGTTGAGCGTTGTCATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGcc                                                                                                                  <  8:129283/148‑1 (MQ=255)                                     gAGCGTTGTCATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGc                                                                                                                   >  5:23264/1‑143 (MQ=255)                                     gAGCGTTGTCATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGc                                                                                                                   <  6:23264/143‑1 (MQ=255)                                             tCATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCt                                                                                                     >  1:140080/1‑149 (MQ=255)                                             gacgctcggcaccctggaaccgggcaaacaggccgacctgctggtgctcgacggttcgcccctggacgacatccgcatccttcaagaccgcgctcggctgcAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCt                                                                                                     >  3:34715‑M1/102‑149 (MQ=255)                                               aTGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGAGAATTTAAGTCCTAAACATGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCTTACCGGCTCGCCGGCCTTGTACACCGCATg                                                                                                    >  6:261679/1‑148 (MQ=255)                                                   tCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTAc                                                                                                                               <  4:224151/117‑1 (MQ=255)                                                   tCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTAc                                                                                                                               >  3:224151/1‑117 (MQ=255)                                                         cctggaaccgggcaaacaggccgacctgctggtgctcgacggttcgcccctggacgacatccgcatccttcaagaccgcgctcggctgcAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTg                                                                                                    >  7:233628‑M1/90‑138 (MQ=255)                                                         cctggaaccgggcaaacaggccgacctgctggtgctcgacggttcgcccctggacgacatccgcatccttcaagaccgcgctcggctgcAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTg                                                                                                    <  8:233628‑M1/49‑1 (MQ=255)                                                          cTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAgc                                                                                           >  7:95827/1‑146 (MQ=255)                                                          cTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAgc                                                                                           <  8:95827/146‑1 (MQ=255)                                                          cTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGcgcg                                                                                        >  3:94538/1‑149 (MQ=255)                                                          cTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGGGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGcgcg                                                                                        <  5:261679/149‑1 (MQ=255)                                                              aTTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCt                                                                                    >  5:191107/1‑149 (MQ=255)                                                                   ccGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGaa                                                                                <  3:180466/148‑1 (MQ=255)                                                                        ttCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGc                                                                          >  7:192925/1‑149 (MQ=255)                                                                          cGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCg                                                                         <  4:94538/148‑1 (MQ=255)                                                                          aggccgacctgctggtgctcgacggttcgcccctggacgacatccgcatccttcaagaccgcgctcggctgca                                                                                                                                                    >  2:265333‑M1/73‑73 (MQ=255)                                                                          aggccgacctgctggtgctcgacggttcgcccctggacgacatccgcatccttcaagaccgcgctcggctgca                                                                                                                                                    <  1:265333‑M1/1‑1 (MQ=255)                                                                           ggACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGa                                                                       <  8:192925/149‑1 (MQ=255)                                                                           ggACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGa                                                                       <  1:162629/149‑1 (MQ=255)                                                                            gACACGCGGTCGCGGGTGTAGATCTCGGTCCAATACATATAATTTAAAACAAACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGAt                                                                      >  2:108636/1‑149 (MQ=255)                                                                                    gTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCa                                                              <  2:140080/149‑1 (MQ=255)                                                                                    gTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCa                                                              <  6:191107/149‑1 (MQ=255)                                                                                                gagGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGc                                                         <  5:337398/142‑1 (MQ=255)                                                                                                gagGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGc                                                         >  6:337398/1‑142 (MQ=255)                                                                                                   gtcggtcCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTc                                                 >  4:54792/1‑147 (MQ=255)                                                                                                        tcCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGACGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGACCCGTCGAGCAc                                           >  5:308222/1‑148 (MQ=255)                                                                                                                aGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCt                                                                                    >  4:47824/1‑99 (MQ=255)                                                                                                                aGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCt                                                                                    <  3:47824/99‑1 (MQ=255)                                                                                                                    aaTTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGcc                              >  5:77997/1‑149 (MQ=255)                                                                                                                    aaTTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGcc                              >  3:175725/1‑149 (MQ=255)                                                                                                                     aTTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCt                             >  1:125662/1‑149 (MQ=255)                                                                                                                        gAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGtt                          >  3:142804/1‑149 (MQ=255)                                                                                                                        gAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTCGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGtt                          >  2:256243/1‑149 (MQ=255)                                                                                                                           gTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGc                       >  3:342703/1‑149 (MQ=255)                                                                                                                                  acCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTc                >  5:62903/1‑149 (MQ=255)                                                                                                                                             gTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGa     <  4:342703/149‑1 (MQ=255)                                                                                                                                              ttGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCg      >  6:240743/1‑147 (MQ=255)                                                                                                                                              ttGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCg      <  5:240743/147‑1 (MQ=255)                                                                                                                                              ttGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAg    >  8:322335/1‑149 (MQ=255)                                                                                                                                                ggAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGc   >  6:78425‑M1/3‑148 (MQ=255)                                                                                                                                                gTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCg  >  1:158602/1‑149 (MQ=255)                                                                                                                                                 tAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCg  >  4:305872/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GGTCGCGACCGCCAGTTGCACTGCCAGTTCGAAGTTGAGCGTTGTCATGCTCACAGCCTCCATTTGCCGAGTTCGGACACGCGGTCGCGGGTGTAGAGGTCGGTCCATTTCAGCGAATTGAAGTCCGACACCTGCTTGGGGTTGTAGGCGGTGCGTTGCAGCCGTACCGGCTCGCCGGCCTTGTACACCGCCTGCAGCCGAGCGCGGTCTTGAAGGATGCGGATGTCGTCCAGGGGCGAACCGTCGAGCACCAGCAGGTCGGCCTGTTTGCCCGGTTCCAGGGTGCCGAGCG  >  NC_002947/3622659‑3622950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.