New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3840186	68 (1.160)	4 (0.070)	4/246	NT	5.6%	coding (1109/1158 nt)	PP_3389	membrane protein
	?	NC_002947	= 3840209	71 (1.270)					coding (1132/1158 nt)	PP_3389	membrane protein

CGCGAGGCCGGCCTGCCCGGCAAGCCAGTCCCACCCGTGACAACCCTGAGCGACTACCCTCCCGCAATCCAGGCACGCCTGCTCGCCAACGCCGACCGCTGGCAGCTCAAGCCCGGCAAGCGGCCGGCGAAAAAGCCACGCAAAACGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3840035‑3840186 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagCCGGTTTCGCTTGCGCTTTGGATCTGCGCGTTTTGCGTGGCTTTTTCGCCGGCCGCTTGCCGGGCTTGAGCTGCCAGCGGTCGGCGTTGGCGAGCAGGCGTGCCTGGATTGCGGGAGGGTAGTCGCTCAGGGTTGTCACGGGTGG  <  NC_002947/3840209‑3840065                                                                                                                                                                                                                                                                                                           CGCGAGGCCGGCCTGCCCGGCAAGCCAGTCCCACCCGTGACAACCCTGAGCGACTACCCTCCCGCAATCCAGGCACGCCTGCTCGCCAACGCCGACCGCTGGCAGCTCAAGCCCGGCAAGCGGCCGGCGAAAAAGCCACGCAAAACGCG                                                                                                                                                      <  2:172375/149‑1  GCGAGGCCGGCCTGCCCTGCAAGCCAGTCCCACCCGTGACAACCCTGAGCGACTACCCTCCCGCAATCCAGGCACGCCTGCTCGCCAACGCCGACCGCTGGCAGCTCAAGCCCGGCAAGCGGCCGGCGAAAAAGCCACGCAAAACGCGC                                                                                                                                                     <  2:210709/149‑1  GCGAGGCCGGCCTGCCCGGCAAGCCAGTCCCACCCGTGACAACCCTGAGCGACTACCCTCCCGCAATCCAGGCACGCCTGCTCGCCAACGCCGACCGCTGGCAGCTCAAGCCCGGCAAGCGGCCGGCGAAAAAGCCACGCAAAACGCGC                                                                                                                                                     <  1:159018/149‑1  GCGAGGCCGGCCTGCCCGGCAAGCCAGTCCCACCCGTGACAACCCTGAGCGACTACCCTCCCGCAATCCAGGCACGCCTGCTCGCCAACGCCGACCGCTGGCAGCTCAAGCCCGGCAAGCGGCCGGCGAAAAAGCCACGCAAAACGCGC                                                                                                                                                     <  3:46960/149‑1                                                          CCTCCCGCAATCCAGGCACGCCTGCTCGCCAACGCCGACCGCTGGCAGCTCAAGCCCGGCAAGCGGCCGGCGAAAAAGCCACGCAAAACGCGCAGCCGGTTTCGCTTGCGCTTTGGATCT                                                                                                                          >  7:300450/1‑120                                                          CCTCCCGCAATCCAGGCACGCCTGCTCGCCAACGCCGACCGCTGGCAGCTCAAGCCCGGCAAGCGGCCGGCGAAAAAGCCACGCAAAACGCGCAGCCGGTTTCGCTTGCGCTTTGGATCT                                                                                                                          <  8:300450/120‑1                                                                                   TCGCCAACGCCGACCGCTGGCAGCTCAAGCCCGGCAAGCGGCCGGCGAAAAAGCCACGCAAAACGCGCAGCCGGTTTCGCTTGCGCTTTGGATCTGCGC                                                                                                                      <  3:139999/99‑1                                                                                   TCGCCAACGCCGACCGCTGGCAGCTCAAGCCCGGCAAGCGGCCGGCGAAAAAGCCACGCAAAACGCGCAGCCGGTTTCGCTTGCGCTTTGGATCTGCGC                                                                                                                      >  4:139999/1‑99                                                                                                                                                   GCGCAGCCGGTTTCGCTTGCGCTTTGGATCTGCGCGTTTTGCGTGGCTTTTTCGCCGGCCGCTTGCCGGGCTTGAGCTGCCAGCGGTCGGCGTTGGCGAGCAGGCGTGCCTGGATTGCGGGAGGGTAGTCGCTCAGGGTTGTCACGGGT    >  3:237975/1‑149                                                                                                                                                     GCAGCCGGTTTCGCTTGCGCTTTGGATCTGCGCGTTTTGCGTGGCTTTTTCGCCGGCCGCTTGCCGGGCTTGAGCTGCCAGCGGTCGGCGTTGGCGAGCAGGCGTGCCTGGATTGCGGGAGGGTAGTCGCTCAGGGTTGTCACGGGTGG  <  4:357196/149‑1                                                                                                                                                     GCAGCCGGTTTCGCTTGCGCTTTGGATCTGCGCGTTTTGCGTGGCTTTTTCGCCGGCCGCTTGCCGGGCTTGAGCTGCCAGCGGTCGGCGTTGGCGAGCAGGCGTGCCTGGATTGCGGGAGGGTAGTCGCTCAGGGTTGTCACGGGTGG  <  6:29320/149‑1                                                                                                                                                                                                                                                                                                           CGCGAGGCCGGCCTGCCCGGCAAGCCAGTCCCACCCGTGACAACCCTGAGCGACTACCCTCCCGCAATCCAGGCACGCCTGCTCGCCAACGCCGACCGCTGGCAGCTCAAGCCCGGCAAGCGGCCGGCGAAAAAGCCACGCAAAACGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3840035‑3840186 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagCCGGTTTCGCTTGCGCTTTGGATCTGCGCGTTTTGCGTGGCTTTTTCGCCGGCCGCTTGCCGGGCTTGAGCTGCCAGCGGTCGGCGTTGGCGAGCAGGCGTGCCTGGATTGCGGGAGGGTAGTCGCTCAGGGTTGTCACGGGTGG  <  NC_002947/3840209‑3840065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.