| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3849838 | 42 (0.710) | 3 (0.050) | 3/248 | NT | 6.4% | coding (1603/2268 nt) | PP_3397 | hypothetical protein |
| ? | NC_002947 | = 3849861 | 47 (0.830) | coding (1626/2268 nt) | PP_3397 | hypothetical protein | |||||
ACTCAACCTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3849687‑3849838‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcCCGGTAGCTGAAGTTGGCTACCAGCGGTTGTGTGGCCCCGGTCGGCGGTGTGTAGGTAACCGAGGTGGTGCCGTTCAGCACGACGCCGCCAAGGCCGGTCCCGGGTTGGGTCAGGTCGCTGATGGTCAGCGGCACGTCGCCATCCGG < NC_002947/3849861‑3849715 ACTCAACCTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCTCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAAC > 1:263775/1‑149ACTCAACCTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAAC > 8:353761/1‑149 TCAACCTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCG > 6:304875/1‑149 AACCTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGC < 5:323858/148‑1 AACCTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGC < 7:196466/148‑1 CGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCCCGGTAGCTGAAGTTGGCTACCAGCGGTTGTGT < 3:327114/149‑1 CCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCCCGGTAGCTGAAGTTGGCTACCAGCGG < 3:269424/113‑1 CCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCCCGGTAGCTGAAGTTGGCTACCAGCGG > 4:269424/1‑113 ACCGCCCGGTAGCTGAAGTTGGCTACCAGCGGTTGTGTGGCCCCGGTCGGCGGTGTGTAGGTAACCGAGGTGGTGCCGTTCAGCACGACGCCGCCAAGGCCGGTCCCGGGTTGGGTCAGGTCGCTGATGGTCAGCGGCACGTCGCCATC > 5:304875/1‑149 GCCCGGTAGCTGAAGTTGGCTACCAGCGGTTGTGTGGCCCCGGGCGGCGGTGTGTAGGTAACCGAGGTGGTGCCGTTCAGCACGACGCCGCCAAGGCCGGTCCCGGGTTGGGTCAGGTCGCTGATGGTCAGCGGCACGTCGCCATCCGG < 7:114299/149‑1 ACTCAACCTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3849687‑3849838‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcCCGGTAGCTGAAGTTGGCTACCAGCGGTTGTGTGGCCCCGGTCGGCGGTGTGTAGGTAACCGAGGTGGTGCCGTTCAGCACGACGCCGCCAAGGCCGGTCCCGGGTTGGGTCAGGTCGCTGATGGTCAGCGGCACGTCGCCATCCGG < NC_002947/3849861‑3849715 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |