New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3849838	42 (0.710)	3 (0.050)	3/248	NT	6.4%	coding (1603/2268 nt)	PP_3397	hypothetical protein
	?	NC_002947	= 3849861	47 (0.830)					coding (1626/2268 nt)	PP_3397	hypothetical protein

CCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATC  >  NC_002947/3849715‑3850006                                                                                                                                                   |                                                                                                                                                  ccGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGCCCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGgc                                                                                                                                                 <  7:114299‑M2/149‑3 (MQ=255)    gATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGTGACCTGCCTTGTTTTTTTTTTTATTTATTGGTCGACCTCGGTTATCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGt                                                                                                                                              <  2:263775/149‑1 (MQ=255)    gATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGgcggt                                                                                                                                              >  5:304875‑M2/1‑144 (MQ=255)                 cGCTGACCATCAGCGCCCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCCCCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTACCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGc                                                                                                                                 >  7:165039/1‑149 (MQ=255)                  gCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGcc                                                                                                                                <  1:297714/149‑1 (MQ=255)                  gCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGAGGTGGATGCCAAGGGc                                                                                                                                 >  7:323372/1‑148 (MQ=255)                  gCTGACCATCAGCGACCTGACACTACCCGGGACCGGCCTTGGTTTTTTTTTTATGTATTGGTCGACCTCGGTTATCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGcc                                                                                                                                <  8:323372/149‑1 (MQ=255)                   cTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCt                                                                                                                               <  3:128624/149‑1 (MQ=255)                          tCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCg                                                                                                                        <  3:340914/149‑1 (MQ=255)                            aGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCCGGGCCACACAACCGCTGGTAGCCAACTTCAGCTAACCGGCGGAGGATGCCAAAGGCCTGAAGTCgc                                                                                                                       >  8:300316/1‑147 (MQ=255)                                  cTGACCAAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGc                                                                                                                >  7:100194/1‑149 (MQ=255)                                        cAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGAt                                                                                                                                          <  3:197868/117‑1 (MQ=255)                                        cAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGAt                                                                                                                                          >  4:197868/1‑117 (MQ=255)                                            tcGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGaa                                                                                                                            >  6:100349/2‑127 (MQ=255)                                            tcGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGaa                                                                                                                            <  5:100349/126‑1 (MQ=255)                                                 aCCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACCGTCACCAGCaa                                                                                                 >  3:212836/1‑149 (MQ=255)                                                    ggCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGt                                                                                              >  4:189806/1‑149 (MQ=255)                                                     gCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCTGTTACCTACACACAGCCGACCGGGTCCACACAACCGCTGTTAGCCAAATTCAGCTACCGGTCGGTTGATGCCAATGGCCTGAAGTCGGaa                                                                                                                     <  7:133017/125‑1 (MQ=255)                                                     gCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTTGATGCCAAGGGCCTGAAGTCGGaa                                                                                                                     <  7:138210/125‑1 (MQ=255)                                                     gCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAAca                                                                                               >  1:105681/1‑146 (MQ=255)                                                          ggcggcGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCAc                                                                                         <  3:189806/148‑1 (MQ=255)                                                               cgtcgtGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAAcc                                                                                   <  3:365728/149‑1 (MQ=255)                                                                          aCGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACt                                                                        <  7:353761/149‑1 (MQ=255)                                                                                 caccTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAAcc                                                                 >  1:62504/1‑149 (MQ=255)                                                                                 caccTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGGGGATGGCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACATAACCAGGCACCGACTGCCAAcc                                                                 >  6:169614/1‑149 (MQ=255)                                                                                    cTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCg                                                               >  2:230325/1‑148 (MQ=255)                                                                                            ccTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTc                                                      <  5:115099/149‑1 (MQ=255)                                                                                             cTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCg                                                     >  5:212732/1‑149 (MQ=255)                                                                                               acacacCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGACTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGc                                                    >  4:219162/1‑148 (MQ=255)                                                                                                 acacCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCAc                                                 >  7:156012/1‑149 (MQ=255)                                                                                                   acCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCAc                                                                                                       <  3:365977/93‑1 (MQ=255)                                                                                                   acCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCAc                                                                                                       >  4:365977/1‑93 (MQ=255)                                                                                                   acCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCt                                               >  7:268416/1‑149 (MQ=255)                                                                                                   acCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCt                                               >  6:165459/1‑149 (MQ=255)                                                                                                     cgccgACCGGGGCCACACAACCGCTGGTAGTCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGaa                                                            <  1:123255/134‑1 (MQ=255)                                                                                                     cgccgACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGaa                                                            >  2:123255/1‑134 (MQ=255)                                                                                                     cgccgACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGAATGCCAACCCGGAAACCGTCGCCACCTTg                                             >  6:34150/1‑149 (MQ=255)                                                                                                      gccgACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTgg                                            <  6:212732/149‑1 (MQ=255)                                                                                                              gggCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCa                                    >  2:82069/1‑149 (MQ=255)                                                                                                                 ccACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACATCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTg                                 <  2:105681/149‑1 (MQ=255)                                                                                                                   acacaACCGCTGGTAGCCAACTTCAGCTACCGGgcggttgtgtggccccggtcggcggtgtgtaggtaaccgaggtggtgccgttcagcacgacgccgccaaggccggtcccgggttgggtcaggtcgctgatggtcagcggcacgtcg                               <  3:327114‑M2/149‑117 (MQ=255)                                                                                                                       aaCCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCAt                            >  4:5692/1‑148 (MQ=255)                                                                                                                       aaCCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATc                           <  8:114299/149‑1 (MQ=255)                                                                                                                         ccGCTGGTAGCCAACTTCAGCTACCGGgcggttgtgtggccccggtcggcggtgtgtaggtaaccgaggtggtgccgttcagcacgacgccgccaaggccggtcccgggttgg                                                             >  4:269424‑M2/1‑27 (MQ=255)                                                                                                                         ccGCTGGTAGCCAACTTCAGCTACCGGgcggttgtgtggccccggtcggcggtgtgtaggtaaccgaggtggtgccgttcagcacgacgccgccaaggccggtcccgggttgg                                                             <  3:269424‑M2/113‑87 (MQ=255)                                                                                                                          cGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAAc                        <  1:230325/149‑1 (MQ=255)                                                                                                                            cTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCAGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATc                           >  5:97304/1‑144 (MQ=255)                                                                                                                            cTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCAGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATc                           <  6:97304/144‑1 (MQ=255)                                                                                                                             tGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCAt                            >  5:201434/1‑142 (MQ=255)                                                                                                                             tGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCAt                            <  6:201434/142‑1 (MQ=255)                                                                                                                               gTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCt                   >  4:175623/1‑149 (MQ=255)                                                                                                                                  gCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGc                <  8:268416/149‑1 (MQ=255)                                                                                                                                   ccAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGcc               <  3:175623/149‑1 (MQ=255)                                                                                                                                     aaCTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCaa             <  2:62504/149‑1 (MQ=255)                                                                                                                                       cTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAAc            >  1:102784/1‑148 (MQ=255)                                                                                                                                                ccGGGCTGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCCACGTGCTGGCCAACGACACCGATc  <  5:200083/149‑1 (MQ=255)                                                                                                                                                ccGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGAt   <  8:156012/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACGTGCTGGCCAACGACACCGATC  >  NC_002947/3849715‑3850006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.