New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3849838	42 (0.710)	3 (0.050)	3/248	NT	6.4%	coding (1603/2268 nt)	PP_3397	hypothetical protein
	?	NC_002947	= 3849861	47 (0.830)					coding (1626/2268 nt)	PP_3397	hypothetical protein

AACCTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACG  >  NC_002947/3849691‑3849985                                                                                                                                                    |                                                                                                                                                    aaCCTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGC                                                                                                                                                     <  7:196466‑M1/148‑1 (MQ=255) aaCCTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGC                                                                                                                                                     <  5:323858‑M1/148‑1 (MQ=255)   ccTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTgg                                                                                                                                                  >  4:340914/1‑149 (MQ=255)               cGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCa                                                                                                                                      <  5:253159/149‑1 (MQ=255)                gACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACAACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACtt                                                                                                                                        >  6:115099/1‑146 (MQ=255)                         ccGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGCCCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGgc                                                                                                                            <  7:114299‑M2/149‑3 (MQ=255)                            gATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGTGACCTGCCTTGTTTTTTTTTTTATTTATTGGTCGACCTCGGTTATCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGt                                                                                                                         <  2:263775/149‑1 (MQ=255)                            gATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGgcggt                                                                                                                         >  5:304875‑M2/1‑144 (MQ=255)                                 cGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCccggtagctgaagttggctaccagcggttgtgt                                                                                                                    <  3:327114‑M1/149‑34 (MQ=255)                                         cGCTGACCATCAGCGCCCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCCCCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTACCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGc                                                                                                            >  7:165039/1‑149 (MQ=255)                                          gCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGcc                                                                                                           <  1:297714/149‑1 (MQ=255)                                          gCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGAGGTGGATGCCAAGGGc                                                                                                            >  7:323372/1‑148 (MQ=255)                                          gCTGACCATCAGCGACCTGACACTACCCGGGACCGGCCTTGGTTTTTTTTTTATGTATTGGTCGACCTCGGTTATCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGcc                                                                                                           <  8:323372/149‑1 (MQ=255)                                           cTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCt                                                                                                          <  3:128624/149‑1 (MQ=255)                                                  tCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCg                                                                                                   <  3:340914/149‑1 (MQ=255)                                                    aGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCCGGGCCACACAACCGCTGGTAGCCAACTTCAGCTAACCGGCGGAGGATGCCAAAGGCCTGAAGTCgc                                                                                                  >  8:300316/1‑147 (MQ=255)                                                          cTGACCAAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGc                                                                                           >  7:100194/1‑149 (MQ=255)                                                               ccAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCccggtagctgaagttggctaccagcgg                                                                                                                          <  3:269424‑M1/113‑28 (MQ=255)                                                               ccAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCccggtagctgaagttggctaccagcgg                                                                                                                          >  4:269424‑M1/1‑86 (MQ=255)                                                                cAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGAt                                                                                                                     <  3:197868/117‑1 (MQ=255)                                                                cAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGAt                                                                                                                     >  4:197868/1‑117 (MQ=255)                                                                    tcGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGaa                                                                                                       >  6:100349/2‑127 (MQ=255)                                                                    tcGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGaa                                                                                                       <  5:100349/126‑1 (MQ=255)                                                                         aCCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACCGTCACCAGCaa                                                                            >  3:212836/1‑149 (MQ=255)                                                                            ggCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGt                                                                         >  4:189806/1‑149 (MQ=255)                                                                             gCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCTGTTACCTACACACAGCCGACCGGGTCCACACAACCGCTGTTAGCCAAATTCAGCTACCGGTCGGTTGATGCCAATGGCCTGAAGTCGGaa                                                                                                <  7:133017/125‑1 (MQ=255)                                                                             gCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTTGATGCCAAGGGCCTGAAGTCGGaa                                                                                                <  7:138210/125‑1 (MQ=255)                                                                             gCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAAca                                                                          >  1:105681/1‑146 (MQ=255)                                                                                  ggcggcGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCAc                                                                    <  3:189806/148‑1 (MQ=255)                                                                                       cgtcgtGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAAcc                                                              <  3:365728/149‑1 (MQ=255)                                                                                                  aCGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACt                                                   <  7:353761/149‑1 (MQ=255)                                                                                                         caccTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAAcc                                            >  1:62504/1‑149 (MQ=255)                                                                                                         caccTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGGGGATGGCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACATAACCAGGCACCGACTGCCAAcc                                            >  6:169614/1‑149 (MQ=255)                                                                                                            cTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCg                                          >  2:230325/1‑148 (MQ=255)                                                                                                                    ccTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTc                                 <  5:115099/149‑1 (MQ=255)                                                                                                                     cTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCg                                >  5:212732/1‑149 (MQ=255)                                                                                                                       acacacCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGACTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGc                               >  4:219162/1‑148 (MQ=255)                                                                                                                         acacCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCAc                            >  7:156012/1‑149 (MQ=255)                                                                                                                           acCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCAc                                                                                  <  3:365977/93‑1 (MQ=255)                                                                                                                           acCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCAc                                                                                  >  4:365977/1‑93 (MQ=255)                                                                                                                           acCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCt                          >  7:268416/1‑149 (MQ=255)                                                                                                                           acCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCt                          >  6:165459/1‑149 (MQ=255)                                                                                                                             cgccgACCGGGGCCACACAACCGCTGGTAGTCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGaa                                       <  1:123255/134‑1 (MQ=255)                                                                                                                             cgccgACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGaa                                       >  2:123255/1‑134 (MQ=255)                                                                                                                             cgccgACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGAATGCCAACCCGGAAACCGTCGCCACCTTg                        >  6:34150/1‑149 (MQ=255)                                                                                                                              gccgACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTgg                       <  6:212732/149‑1 (MQ=255)                                                                                                                                      gggCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCa               >  2:82069/1‑149 (MQ=255)                                                                                                                                         ccACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACATCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTg            <  2:105681/149‑1 (MQ=255)                                                                                                                                           acacaACCGCTGGTAGCCAACTTCAGCTACCGGgcggttgtgtggccccggtcggcggtgtgtaggtaaccgaggtggtgccgttcagcacgacgccgccaaggccggtcccgggttgggtcaggtcgctgatggtcagcggcacgtcg          <  3:327114‑M2/149‑117 (MQ=255)                                                                                                                                               aaCCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCAt       >  4:5692/1‑148 (MQ=255)                                                                                                                                               aaCCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATc      <  8:114299/149‑1 (MQ=255)                                                                                                                                                aCCGCccggtagctgaagttggctaccagcggttgtgtggccccggtcggcggtgtgtaggtaaccgaggtggtgccgttcagcacgacgccgccaaggccggtcccgggttgggtcaggtcgctgatggtcagcggcacgtcgccatc     >  5:304875‑M1/1‑5 (MQ=255)                                                                                                                                                 ccGCTGGTAGCCAACTTCAGCTACCGGgcggttgtgtggccccggtcggcggtgtgtaggtaaccgaggtggtgccgttcagcacgacgccgccaaggccggtcccgggttgg                                        <  3:269424‑M2/113‑87 (MQ=255)                                                                                                                                                 ccGCTGGTAGCCAACTTCAGCTACCGGgcggttgtgtggccccggtcggcggtgtgtaggtaaccgaggtggtgccgttcagcacgacgccgccaaggccggtcccgggttgg                                        >  4:269424‑M2/1‑27 (MQ=255)                                                                                                                                                  cGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAAc   <  1:230325/149‑1 (MQ=255)                                                                                                                                                   gCccggtagctgaagttggctaccagcggttgtgtggccccgggcggcggtgtgtaggtaaccgaggtggtgccgttcagcacgacgccgccaaggccggtcccgggttgggtcaggtcgctgatggtcagcggcacgtcgccatccgg  <  7:114299‑M1/149‑148 (MQ=255)                                                                                                                                                    cTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCAGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATc      <  6:97304/144‑1 (MQ=255)                                                                                                                                                    cTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCAGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATc      >  5:97304/1‑144 (MQ=255)                                                                                                                                                    |                                                                                                                                                    AACCTGCTGCTGAACGACAGCGACCCGGATGGCGACGTGCCGCTGACCATCAGCGACCTGACCCAACCCGGGACCGGCCTTGGCGGCGTCGTGCTGAACGGCACCACCTCGGTTACCTACACACCGCCGACCGGGGCCACACAACCGCTGGTAGCCAACTTCAGCTACCGGGCGGTGGATGCCAAGGGCCTGAAGTCGGAACCGGCCACGGTCACCATCAACGTCGCACCTAACCAGGCACCGACTGCCAACCCGGAAACCGTCGCCACCTTGGGCGTGCCATTGACCATCAACG  >  NC_002947/3849691‑3849985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.