New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3874713 =	49 (0.830)	4 (0.070)	4/246	NT	8.8%	coding (195/594 nt)	ltg	lytic transglycosylase
	?	NC_002947	3874795 =	36 (0.640)					coding (113/594 nt)	ltg	lytic transglycosylase

CTGCCCAGGCCGATGTGTACATCTCAATCGATGCCAAGGGTGGCTACGTACTGACCAATGTCCATCGACCAGGGCGACACTATGAGAAGGTGATCAGCGAGCCGCTGGCCCAGGGTGGCCCGGTCAAAGCGCAGATGATCACCGGCCGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3874864‑3874713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccctGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGG  >  NC_002947/3874795‑3874941                                                                                                                                                                                                                                                                                                             CTGCCCAGGCCGATGTGTACATCTCAATCGATGCCAAGGGTGGCTACGTACTGACCAATGTCCATCGACCAGGGCGACACTATGAGAAGGTGATCAGCGAGCCGCTGGCCCAGGGTGGCCCGGTCAAAGCGCAGATGATCACCGGCCGC                                                                                                                                                        >  4:86268/1‑149                                                             TCCATCGACCAGGGCGACACTATGAGAAGGTGATCAGCGAGCCGCTGGCCCAGGGTGGCCCGGTCAAAGCGCAGATGATCACCGGCCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACA                                                                                            >  2:168035/1‑149                                                                 TCGACCAGGGCGACACTATGAGAAGGTGATCAGCGAGCCGCTGGCCCAGGGTGGCCCGGTCAAAGCGCAGATGATCACCGGCCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGG                                                                                        >  2:138262/1‑149                                                                                 TATGAGAAGGTGATCAGCGAGCCGCTGGCCCAGGGTGGCCCGGTCAAAGCGCAGATGATCACCGGCCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGC                                                                        <  1:168035/149‑1                                                                                    GAGAAGGTGATCAGCGAGCCGCTGGCCCAGGGTGGCCCGGTCAAAGCGCAGATGATCACCGGCCGCCC                                                                                                                                                      <  1:328155/68‑1                                                                                    GAGAAGGTGATCAGCGAGCCGCTGGCCCAGGGTGGCCCGGTCAAAGCGCAGATGATCACCGGCCGCCC                                                                                                                                                      >  2:328155/1‑68                                                                                                                         CGGTCAAAGCGCAGATGATCACCGGCCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCG                                <  1:138262/149‑1                                                                                                                                                       CTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGG  <  5:365207/149‑1                                                                                                                                                                                                                                                                                                             CTGCCCAGGCCGATGTGTACATCTCAATCGATGCCAAGGGTGGCTACGTACTGACCAATGTCCATCGACCAGGGCGACACTATGAGAAGGTGATCAGCGAGCCGCTGGCCCAGGGTGGCCCGGTCAAAGCGCAGATGATCACCGGCCGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3874864‑3874713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccctGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGG  >  NC_002947/3874795‑3874941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.