New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3874713 =	49 (0.830)	4 (0.070)	4/246	NT	8.8%	coding (195/594 nt)	ltg	lytic transglycosylase
	?	NC_002947	3874795 =	36 (0.640)					coding (113/594 nt)	ltg	lytic transglycosylase

ACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGG  >  NC_002947/3874648‑3874941                                                                                                                                                    |                                                                                                                                                   aCCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTgg                                                                                                                                                   >  5:78403/1‑149 (MQ=255)     ccgatgtgtacatctcaatcgatgccaagggtggctacgtactgaccaatgtccatcgaccAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGa                                                                                                                                               >  2:138262‑M1/62‑149 (MQ=255)       tGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATg                                                                                                                                             <  7:53295/149‑1 (MQ=255)         tgtgtacatctcaatcgatgccaagggtggctacgtactgaccaatgtccatcgaccAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGa                                                                                                                                           >  2:168035‑M1/58‑149 (MQ=255)              gcgcCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTg                                                                                                                                      <  2:349217/149‑1 (MQ=255)              gcgcCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTg                                                                                                                                      <  4:34011/149‑1 (MQ=255)               cgcCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTgg                                                                                                                                     <  4:84959/149‑1 (MQ=255)                  cggcggCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCa                                                                                                                                  <  7:14658/149‑1 (MQ=255)                  cggcggCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCa                                                                                                                                  <  2:104257/149‑1 (MQ=255)                   ggcggcAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAg                                                                                                                                 <  6:78403/149‑1 (MQ=255)                                   ggCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTg                                                                                                                 <  5:220468/149‑1 (MQ=255)                                            ccGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGAtt                                                                                                        <  5:167901/149‑1 (MQ=255)                                              gTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCCCCCTTGGCATCGAtt                                                                                                        >  4:292548/1‑147 (MQ=255)                                                 gCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGAt                                                                                                   >  5:312512/1‑149 (MQ=255)                                                        tccatcgaccagggcgacactatgagaaggtgatcagcgagccgctggcccagggtggcccggtcaaagcgcagatgatcaccggccgccctGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTAcaca                                                                                            >  2:168035‑M2/93‑149 (MQ=255)                                                            tcgaccagggcgacactatgagaaggtgatcagcgagccgctggcccagggtggcccggtcaaagcgcagatgatcaccggccgccctGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCgg                                                                                        >  2:138262‑M2/89‑149 (MQ=255)                                                               gTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCt                                                                                     <  1:72480/149‑1 (MQ=255)                                                                     GCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGgcag                                                                               >  4:86268‑M1/1‑149 (MQ=255)                                                                            tatgagaaggtgatcagcgagccgctggcccagggtggcccggtcaaagcgcagatgatcaccggccgccctGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTgc                                                                        <  1:168035‑M2/77‑1 (MQ=255)                                                                                 catcTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCgcca                                                                   >  4:133355/1‑149 (MQ=255)                                                                                  atcTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCgcca                                                                   <  6:312512/148‑1 (MQ=255)                                                                                      gcgcTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCgccagcagt                                                              >  3:178851/1‑146 (MQ=255)                                                                                       cgcTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGa                                                             <  1:307851/149‑1 (MQ=255)                                                                                          tttGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATc                                                           >  5:63375/1‑148 (MQ=255)                                                                                             gACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCaaa                                                        <  6:63375/148‑1 (MQ=255)                                                                                              aCCGGGCCACCCTGGGCCAGCGGCTCGCTGTTCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAAcc                                                      >  1:33611/1‑149 (MQ=255)                                                                                              aCCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAAcc                                                      >  5:181251/1‑149 (MQ=255)                                                                                                cGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGa                                                    <  2:243372/149‑1 (MQ=255)                                                                                                     cACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAAt                                                >  3:218418/1‑148 (MQ=255)                                                                                                      aCCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGa                                              <  6:181251/149‑1 (MQ=255)                                                                                                              ccAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGc                                      <  2:282798/149‑1 (MQ=255)                                                                                                                 gCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGa                                                             <  2:90244/123‑1 (MQ=255)                                                                                                                 gCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGa                                                    >  8:169631/1‑132 (MQ=255)                                                                                                                 gCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGa                                                    <  7:169631/132‑1 (MQ=255)                                                                                                                 gCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGGACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGa                                                             >  1:90244/1‑123 (MQ=255)                                                                                                                    cggtcaaagcgcagatgatcaccggccgccctGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCg                                <  1:138262‑M2/117‑1 (MQ=255)                                                                                                                        gCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATa                                                  <  1:80480/127‑1 (MQ=255)                                                                                                                        gCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATa                                                  >  2:80480/1‑127 (MQ=255)                                                                                                                            aTCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCgccagc                                                                 <  4:342241/108‑1 (MQ=255)                                                                                                                            aTCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCgccagc                                                                 >  3:342241/1‑108 (MQ=255)                                                                                                                                ccTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTtcg                    >  3:277580/1‑149 (MQ=255)                                                                                                                                  ttCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCCTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTtcgtc                  >  6:44265/1‑149 (MQ=255)                                                                                                                                       aTAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGc             >  1:179534/1‑149 (MQ=255)                                                                                                                                       aTAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGc             >  6:115902/1‑149 (MQ=255)                                                                                                                                         aGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGccc           >  6:365207/1‑149 (MQ=255)                                                                                                                                                  ctGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTgg  <  5:365207‑M2/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ACCGCGTGCAGCAGCGCCGGCGGCAGGTTGTGGAGGCGCGCAGCCGTGGCGACTACCTCGGCGTAAGGGCGGCCGGTGATCATCTGCGCTTTGACCGGGCCACCCTGGGCCAGCGGCTCGCTGATCACCTTCTCATAGTGTCGCCCTGGTCGATGGACATTGGTCAGTACGTAGCCACCCTTGGCATCGATTGAGATGTACACATCGGCCTGGGCAGCACCTGCCGCCAGCCAGATCAAACCGATAATGAGTCCACGCATGCCGGTCGCCTCTTCGTCGTGGCCCCCGATGTGG  >  NC_002947/3874648‑3874941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.