New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3962198	38 (0.650)	4 (0.070)	3/238	NT	10.0%	coding (396/1152 nt)	PP_3492	acyl‑CoA dehydrogenase
	?	NC_002947	= 3962291	37 (0.680)					coding (489/1152 nt)	PP_3492	acyl‑CoA dehydrogenase

TGCGGCGCCACCGGGGCGATGATGAGCATCCACAACTCGGTAGGTTGCGGCCCGCTGCTGGCCTACGGTACCGCCGAACAGCAACAGCAGTGGCTGCCTCGCCTGGCCAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3962043‑3962198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggccggcACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACCAGCTCGGCGCGGGTGCGCAGGTTGTGCGCCTCGGAGCCGGCCTGGGGCTCGGTCAGGCAGAAGCAGCCAATCACCTCGCCGCTGGCCAG  <  NC_002947/3962291‑3962145                                                                                                                                                                                                                                                                                                                 TGCGGCGCCACCGGGGCGATGATGAGCATCCACAACTCGGTAGGTTGCGGCCCGCTGCTGGCCTACGGTACCGCCGAACAGCAACAGCAGTGGCTGCCTCGCCTGGCCAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCC                                                                                                                                                              >  1:353866/1‑147        CCACCGGGGCGATGATGAGCATCCACAACTCGGTAGGTTGCGGCCCGCTGCTGGCCTACGGTACCGCCGAACAGCAACAGCAGTGGCTGCCTCGCCTGGCCAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGC                                                                                                                                                     <  8:226913/149‑1                                                                             AACAGCAACAGCAGTGGCTGCCTCGCCTGGCCAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACCAGCTCGGCGCG                                                                                >  5:363863/1‑149                                                                                AGCAACAGCAGTGGCTGCCTCGCCTGGCCAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACCAGCTCGGCGCGGGT                                                                             >  3:298313/1‑149                                                                                                               CGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACCAGCTCGGCGCGGGTGCGCAGGTTGTGCGCCTCGGAGCCGGCCTGG                                              <  4:298313/149‑1                                                                                                               CGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACCAGCTCGGCGCGGGTGCGCAGGTTGTGCGCCTCGGAGCCGGCCTGG                                              <  6:363863/149‑1                                                                                                                                                   CCAGGCCGGCACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACCAGCTCGGCGCGGGTGCGCAGGTTGTGCGCCTCGGAGCCGGCCTGGGGCTCGGTCAGGCAGAAGCAGCCAATCACCTCGCCG          >  8:229832/1‑149                                                                                                                                                      GGCCGGCACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACCAGCTCGGCGCGGGTGCGCAGGTTGTGCGCCTCGGAGCCGGCCTGGGGCTCGGTCAGGCAGAAGCAGCCAATCACCTCGCCGCTG       <  3:161647/149‑1                                                                                                                                                       GCCGGCACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACCAGCTCGGCGCGGGTGCGCAGGTTGTGCGCCTCGGAGCCGGCCTGGGGCTCGGTCAGGCAGAAGCAGCCAATCACCTCGCCGCTGG      >  3:233178/1‑149                                                                                                                                                       GCCGGCACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACAAGCTCGGCGCGGGTGCGCAGGTTGTGCGCCTCGGAGCCGGCCTGGGGCACGGTCAGGCAGAAGCAGCCAATCACCTCGCCGCTGG      >  3:171555/1‑149                                                                                                                                                           GCACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACCAGCTCGGCGCGGGTGCGCAGGTTGTGCGCCTCGGAGCCGGCCTGGGGCTCGGTCAGGCAGAAGCAGCCAATCACCTCGCCGCTGGCCAG  >  2:245657/1‑149                                                                                                                                                           GCACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACCAGCTCGGCGCGGGTGCGCAGGTTGTGCGCCTCGGAGCCGGCCTGGGGCTCG                                        <  6:301135/111‑1                                                                                                                                                                                                                                                                                                                 TGCGGCGCCACCGGGGCGATGATGAGCATCCACAACTCGGTAGGTTGCGGCCCGCTGCTGGCCTACGGTACCGCCGAACAGCAACAGCAGTGGCTGCCTCGCCTGGCCAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3962043‑3962198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggccggcACGGCGGGCGTTGCTGACGAACTGCTTGGCACCGTTGATGACCCACTGGCCATCCACCAGCTCGGCGCGGGTGCGCAGGTTGTGCGCCTCGGAGCCGGCCTGGGGCTCGGTCAGGCAGAAGCAGCCAATCACCTCGCCGCTGGCCAG  <  NC_002947/3962291‑3962145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.