New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3962198	38 (0.650)	4 (0.070)	3/238	NT	10.0%	coding (396/1152 nt)	PP_3492	acyl‑CoA dehydrogenase
	?	NC_002947	= 3962291	37 (0.680)					coding (489/1152 nt)	PP_3492	acyl‑CoA dehydrogenase

CTGGCCAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAACCCTGGGTTCAAGGTTGACCGCAGCGAACACAAGATGGGCATTCGCGCCTC  >  NC_002947/3962145‑3962425                                                                                                                                                   |                                                                                                                                       cTGGCCAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTgc                                                                                                                                      >  2:245657‑M2/1‑147 (MQ=255)     ccAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGTGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTTGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTgccggc                                                                                                                                  >  3:171555‑M2/1‑143 (MQ=255)     ccAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTgccggc                                                                                                                                  >  3:233178‑M2/1‑143 (MQ=255)      cAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTgccggcc                                                                                                                                 <  3:161647‑M2/149‑8 (MQ=255)         cggcgAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTgccggcctgg                                                                                                                              >  8:229832‑M2/1‑139 (MQ=255)                gTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCTCGGAGTCGGACAACCTGCGCACCCTCGCCTAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCTTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGt                                                                                                                       <  6:80725/149‑1 (MQ=255)                 tGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTc                                                                                                                      >  7:31037/1‑149 (MQ=255)                   aTTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCtt                                                                                                                    >  2:111987/1‑149 (MQ=255)                       gctgctTCTGCCTGACCGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCg                                                                                                                  >  6:357158/1‑147 (MQ=255)                              cTGCCTGACCGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTgac                                                                                                           <  3:113054/147‑1 (MQ=255)                                     aCCGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCgg                                                                                                   <  5:329638/148‑1 (MQ=255)                                       cGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTgc                                                                                                                                      <  6:301135‑M2/111‑3 (MQ=255)                                       cGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGc                                                                                                >  6:174438/1‑149 (MQ=255)                                        gAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCt                                                                                               <  7:43833/149‑1 (MQ=255)                                          gCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTgg                                                                                             <  4:2079/149‑1 (MQ=255)                                           ccccAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTgac                                                                                                           >  2:277018/1‑134 (MQ=255)                                           ccccAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTgac                                                                                                           <  1:277018/134‑1 (MQ=255)                                           ccccAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTggg                                                                                            <  5:174438/149‑1 (MQ=255)                                            cccAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTggg                                                                                            >  7:77443/1‑148 (MQ=255)                                            cccAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGc                                                                                           <  2:312406/149‑1 (MQ=255)                                             ccAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTgccggcctggggctcggtcaggcagaagcagccaatcacctcgccg                                                                                          <  4:298313‑M2/149‑47 (MQ=255)                                             ccAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTgccggcctggggctcggtcaggcagaagcagccaatcacctcgccg                                                                                          <  6:363863‑M2/149‑47 (MQ=255)                                                     gCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGc                                                                                  <  5:357158/149‑1 (MQ=255)                                                     gCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGc                                                                                  <  4:161647/149‑1 (MQ=255)                                                       tCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTgg                                                                                             >  3:70133/1‑136 (MQ=255)                                                       tCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTgg                                                                                             <  4:70133/136‑1 (MQ=255)                                                       tCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCt                                                                                >  3:269450/1‑149 (MQ=255)                                                               gcACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGt                                                                        >  5:255755/1‑149 (MQ=255)                                                                 acaACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTc                                                                      <  1:111987/149‑1 (MQ=255)                                                                   aaCCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCa                                                                                                                <  1:24971/105‑1 (MQ=255)                                                                   aaCCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCa                                                                                                                >  2:24971/1‑105 (MQ=255)                                                                   aaCCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCt                                                                    <  8:77443/149‑1 (MQ=255)                                                                      cTGCGCACACGCGCCGAGCTGGTGGATGGCCAGTGGGTCATAAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTATTCGCAGTcaccga                                                                                                        >  2:362653/1‑110 (MQ=255)                                                                        gcgcACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGc                                                               >  7:231561/1‑149 (MQ=255)                                                                            aCCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTgccggcctggggctcggtcaggcagaagcagccaatcacctcgccgctggccaggcgaggcagccactgctgttgct                                                           >  3:298313‑M2/1‑72 (MQ=255)                                                                            aCCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCAc                                                           <  6:255755/149‑1 (MQ=255)                                                                               cgcgCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTgccggcctggggctcggtcaggcagaagcagccaatcacctcgccgctggccaggcgaggcagccactgctgttgctgtt                                                        >  5:363863‑M2/1‑69 (MQ=255)                                                                                   ccGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAAc                                                    >  6:204192/1‑149 (MQ=255)                                                                                   ccGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAAc                                                    >  5:168053/1‑149 (MQ=255)                                                                                              gATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAACCCTGGGTTCaa                                         <  5:204192/149‑1 (MQ=255)                                                                                                           tcatcaACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAACCCTGGGTTCAAGGTTGACCGCAGc                            <  6:168053/149‑1 (MQ=255)                                                                                                             atcaACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAACCCTGGGTTCAAGGTTGACCGCAGCg                           >  5:165027/1‑148 (MQ=255)                                                                                                                     tGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAACCCTGGGTTCAAGGTTGACCGCAGCGAACACAAGa                  <  4:269450/149‑1 (MQ=255)                                                                                                                         aaGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAACCCTGGGTTCAAGGTTGACCGCAGCGAACACAAGATggg              >  5:28354/1‑149 (MQ=255)                                                                                                                         aaGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAACCCTGGGTTCAAGGTTGACCGCAGCGAACACAAGATggg              <  6:165027/149‑1 (MQ=255)                                                                                                                                  gTCAGCAACGACCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAACCCTGGGTTCAAGGTTGACCGCAGCGAACACAAGATGGGCATTcgcg      >  7:331864/1‑148 (MQ=255)                                                                                                                                     aGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAACCCTGGGTTCAAGGTTGACCGCAGCGAACACAAGATGGGCATTCGCGCCTc  <  8:31037/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                       CTGGCCAGCGGCGAGGTGATTGGCTGCTTCTGCCTGACCGAGCCCCAGGCCGGCTCCGAGGCGCACAACCTGCGCACCCGCGCCGAGCTGGTGGATGGCCAGTGGGTCATCAACGGTGCCAAGCAGTTCGTCAGCAACGCCCGCCGTGCCGGCCTGGCGATCGTCTTCGCAGTGACCGACCCGGAGCTGGGCAAGAAAGGCCTGTCGGCGTTCCTGGTGCCCACCGACAACCCTGGGTTCAAGGTTGACCGCAGCGAACACAAGATGGGCATTCGCGCCTC  >  NC_002947/3962145‑3962425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.