| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4407246 = | 48 (0.820) | 5 (0.090) | 4/248 | NT | 9.6% | coding (598/1299 nt) | PP_3889 | putative Phage integrase |
| ? | NC_002947 | 4407282 = | 48 (0.850) | coding (562/1299 nt) | PP_3889 | putative Phage integrase | |||||
TGCGACAGATGTTCGGCATGCTGCTGACCGCCTTCCGCCAGGCCTTGAAGCTGGGGATGATCGATAGCAATCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4407356‑4407246‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTT > NC_002947/4407282‑4407429 TGCGACAGATGTTCGGCATGCTGCTGACCGCCTTCCGCCAGGCCTTGAAGCTGGGGATGATCGATAGCAATCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAG < 6:292754/107‑1 TCCCATGGCCGGGGTGCGCTTCAACGCCTTCACCAAGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCC > 4:248101/1‑149 TCCCATGGCCGGGGTGCGCTTCAACGACTTCCCCAAGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCC > 7:200330/1‑149 CCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGC > 6:223248/1‑146 ATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCCATGGGATTGCTATCGATCATACCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGC > 2:221905/1‑144 CGGGGTGCGCTTCAACGACTTCACCAAGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAGTCGACAGCTTGGCCTGGCCGGGCCAGATCAGG < 1:221905/149‑1 ATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTT < 1:138741/149‑1 TGCGACAGATGTTCGGCATGCTGCTGACCGCCTTCCGCCAGGCCTTGAAGCTGGGGATGATCGATAGCAATCCCATGGCCGGGGTGCGCTTCAACGACTTCACCAAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4407356‑4407246‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTT > NC_002947/4407282‑4407429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |