New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4407246 =	48 (0.820)	5 (0.090)	4/248	NT	9.6%	coding (598/1299 nt)	PP_3889	putative Phage integrase
	?	NC_002947	4407282 =	48 (0.850)					coding (562/1299 nt)	PP_3889	putative Phage integrase

TCAGGGCCAGCATGGCGTCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTT  >  NC_002947/4407138‑4407429                                                                                                                                                 |                                                                                                                                                     tcaGGGCCAGCATGGCGTCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGa                                                                                                                                                  >  1:60217/1‑149 (MQ=255) tcaGGGCCAGCATGGCGTCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGa                                                                                                                                                  <  5:198834/149‑1 (MQ=255) ggcccggccaggccaagctgtccctgtcctacctgcgacagatgttcggcatgctgctgaccgccttccgccaggccttgaagctggggatgatcgatagcaatcccaTGGCCTTGGTGAAGGCGTTGAAGCGCACCCCGGCCATGGGa                                                                                                                                                  >  4:248101‑M1/109‑149 (MQ=255) ggcccggccaggccaagctgtccctgtcctacctgcgacagatgttcggcatgctgctgaccgccttccgccaggccttgaagctggggatgatcgatagcaatcccaTGGCCTTGGGGAAGTCGTTGAAGCGCACCCCGGCCATGGGa                                                                                                                                                  >  7:200330‑M1/109‑149 (MQ=255)  gcccggccaggccaagctgtccctgtcctacctgcgacagatgttcggcatgctgctgaccgccttccgccaggccttgaagctgggtatgatcgatagcaatcccaTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCAt                                                                                                                                                      >  2:221905‑M1/108‑144 (MQ=255)  gcccggccaggccaagctgtccctgtcctacctgcgacagatgttcggcatgctgctgaccgccttccgccaggccttgaagctggggatgatcgatagcaatcccaTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATgg                                                                                                                                                    >  6:223248‑M1/108‑146 (MQ=255)  caGGGCCAGCATGGCGTCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTAGGACTTGGTGAAGTCGTTGAAGCGCACCACGGCCATGCGAt                                                                                                                                                 >  2:221756/1‑149 (MQ=255)   aGGGCCAGCATGGCGTCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGAtt                                                                                                                                                <  4:21846/149‑1 (MQ=255)     gtccAGCATGGCGTAATTCGGGGCTTCCTCGAAGGGCTGGGCCAGCTGCTGCTTCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTg                                                                                                                                               <  4:9198/146‑1 (MQ=255)       ccAGCATGGCGTCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTa                                                                                                                                            >  4:14137/1‑149 (MQ=255)       ccAGCATGGCGTCAGTCGGGGCTGCCTCGAAGGCCTGCGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGGGAAGTCGGTGAAGCGCCCCCCGGCCAAGGGATTCCTa                                                                                                                                            >  6:102690/1‑149 (MQ=255)        cAGCATGGCGTCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTAt                                                                                                                                           <  5:58204/149‑1 (MQ=255)              ggCGTCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATTTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATc                                                                                                                                          <  1:92653/144‑1 (MQ=255)              ggCGTCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATc                                                                                                                                          >  2:92653/1‑144 (MQ=255)                 gTCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATcc                                                                                                                                  >  5:49429/1‑149 (MQ=255)                  tCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATccc                                                                                                                                 <  2:36812/149‑1 (MQ=255)                   cATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATccc                                                                                                                                 >  1:156112/1‑148 (MQ=255)                    aTTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCa                                                                                                                               <  5:150525/149‑1 (MQ=255)                           gCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCaa                                                                                                                        <  8:275553/149‑1 (MQ=255)                                cTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGGAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCt                                                                                                                   >  4:189175/1‑149 (MQ=255)                                         cTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAgg                                                                                                          >  2:138741/1‑149 (MQ=255)                                            ggCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCg                                                                                                        <  6:49429/148‑1 (MQ=255)                                              ccAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGt                                                                                                      >  1:198196/1‑148 (MQ=255)                                                  ctgctgCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTcagca                                                                                                 <  1:216770/149‑1 (MQ=255)                                                   tgctgcATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTcagcag                                                                                                >  8:248983/1‑149 (MQ=255)                                                     ctgcATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCagcagc                                                                                               <  7:248983/148‑1 (MQ=255)                                                        cATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATg                                                                                            <  3:330597/148‑1 (MQ=255)                                                        cATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGc                                                                                           >  1:284118/1‑149 (MQ=255)                                                         aTCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGcc                                                                                          <  2:198196/149‑1 (MQ=255)                                                            aGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGa                                                                                        <  1:221756/148‑1 (MQ=255)                                                                    cAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACGCGGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTc                                                                               <  5:102690/149‑1 (MQ=255)                                                                           aCGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTa                                                                        <  2:284118/149‑1 (MQ=255)                                                                                          gccgccTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCtt                                                        >  2:241825/1‑149 (MQ=255)                                                                                           ccgccTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTa                                                                        >  8:228372/1‑133 (MQ=255)                                                                                           ccgccTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTa                                                                        <  7:228372/133‑1 (MQ=255)                                                                                                  gggCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTtgtcctg                                                  <  2:156112/147‑1 (MQ=255)                                                                                                    gCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAAGACAG‑GGACAGCTTGGCCTGGCCg                                              >  6:91177/1‑149 (MQ=255)                                                                                                     cAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCgg                                             <  3:14137/149‑1 (MQ=255)                                                                                                        tcccatggccggggtgcgcttcaacgccttcaccaaggccaTGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGcc                                          >  4:248101‑M2/42‑149 (MQ=255)                                                                                                        tcccatggccggggtgcgcttcaacgacttccccaaggccaTGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGcc                                          >  7:200330‑M2/42‑149 (MQ=255)                                                                                                          tCTTGGCCTTGGTGATGTCTTTGAAGCGCACCCCGGCCATGGGATTGATATCTATCATCCCCAGCTTCAAGGCCGGGCGGATGGCGGTCAGCAGCATGCCTAACATGTGTCGATGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCa                                         <  1:241825/148‑1 (MQ=255)                                                                                                          ccatggccggggtgcgcttcaacgacttcaccaaggccaTGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGc                                           >  6:223248‑M2/40‑146 (MQ=255)                                                                                                            atggccggggtgcgcttcaacgacttcaccaaggccaTGGGATTGCTATCGATCATACCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGc                                           >  2:221905‑M2/38‑144 (MQ=255)                                                                                                                 cggggtgcgcttcaacgacttcaccaaggccaTGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAGTCGACAGCTTGGCCTGGCCGGGCCAGATCAgg                                  <  1:221905‑M2/117‑1 (MQ=255)                                                                                                                 CTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCa                                                                            <  6:292754‑M1/107‑1 (MQ=255)                                                                                                                    ggTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGc                               <  3:189175/148‑1 (MQ=255)                                                                                                                     gTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGt                                                                                <  7:138319/99‑1 (MQ=255)                                                                                                                     gTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGt                                                                                >  8:138319/1‑99 (MQ=255)                                                                                                                         aGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTatc                          >  1:118823/1‑148 (MQ=255)                                                                                                                          gTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTatcaa                        >  5:325694/1‑149 (MQ=255)                                                                                                                           tCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGc                                           >  7:102880/1‑129 (MQ=255)                                                                                                                           tCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGc                                           <  8:102880/129‑1 (MQ=255)                                                                                                                             gTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCTGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTatcaat                       >  1:343047/1‑147 (MQ=255)                                                                                                                             gTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTatcaatca                     <  6:207909/149‑1 (MQ=255)                                                                                                                             gTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTatcaat                       >  5:207909/1‑147 (MQ=255)                                                                                                                                  aGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTatcaatc                      >  6:113798/1‑143 (MQ=255)                                                                                                                                  aGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTatcaatc                      <  5:113798/143‑1 (MQ=255)                                                                                                                                   gcgcACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGAGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGTCAGc                                                          >  4:357007/1‑106 (MQ=255)                                                                                                                                     gcACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTcggcg             <  2:212489/149‑1 (MQ=255)                                                                                                                                      cACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTcggcgg            >  5:28242/1‑149 (MQ=255)                                                                                                                                       aCCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGt           >  2:199256/1‑149 (MQ=255)                                                                                                                                         cccGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGa         <  2:118823/149‑1 (MQ=255)                                                                                                                                                aTGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACtt  <  1:138741‑M2/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TCAGGGCCAGCATGGCGTCATTCGGGGCTGCCTCGAAGGCCTGGGCCAGCTGCTGCATCAGCTCCGGCAACTGCACGCTGCGCAGGCGGGCCGCCTTGGGCAGGATCTTGGCCTTGGTGAAGTCGTTGAAGCGCACCCCGGCCATGGGATTGCTATCGATCATCCCCAGCTTCAAGGCCTGGCGGAAGGCGGTCAGCAGCATGCCGAACATCTGTCGCAGGTAGGACAG‑GGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTT  >  NC_002947/4407138‑4407429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.