New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4474813	51 (0.870)	3 (0.050)	3/242	NT	5.8%	coding (723/1536 nt)	PP_3964	transposase
	?	NC_002947	= 4474834	50 (0.910)					coding (702/1536 nt)	PP_3964	transposase

TTGGGCTGAAGTCGTAAACCACCGCTTTGAGCCCTGAAAACGGCGTCGTGCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCC‑TGGCGCAAGCATTTGCACCGGTGTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4474659‑4474813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttcaGCCACTGGTCGATGCACTGCGTGAAGCCGTGCT  <  NC_002947/4474834‑4474802                                                                                                                                                                                               TTGGGCTGAAGTCGTAAACCACCGCTTTGAGCCCTGAAAACGGCGTCGTGCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCC‑TGGCGCAAGCATTTGCACCGGTGTCTCATCAGCGTGGATCACGCCCTGATTCAGCACG                                         >  4:243773/1‑149 TTGGGCTGAAGTCGTAAACCACCGCTTTGAGCCCTGAAAACGGCGTCGTGCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCC‑TGGCGCAAGCATTTGCACCGGTGTCTCATCAGCGTGGATCACGCCCTGATTCAGCACG                                         >  7:229783/1‑149    GGCTGAAGTCGTAAACCACCGCTTTGAGCCCTGAAAACGGCGTCGTGCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCC‑TGGCGCAAGCATTTGCACCGGTGTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCT                                      >  6:328026/1‑149       TGAAGTCGTAAACCACCGCTTTGAGCCCTGAAAACGGCGTCGTGCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCCTTAGCGCAAGCATTTGCACCGGTGTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTC                                    <  1:105856/149‑1                                        ACGGCGTCGTGCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCC‑TGGCGCAAGCATTTGCACCGGTGTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCAGCCACTGGTCGATGCACTGCGTGAAGCCGTGCT  <  5:191422/149‑1                                                           CCAGACATAGGCCCGGTGGGTTTTCTTCTCGCC‑TGGCGCAAGCATTTGCACCGGTGTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCAGCCACTGGTCGATGCACTGCGTGAAGCCGTGC   >  1:241987/1‑129                                                           CCAGACATAGGCCCGGTGGGTTTTCTTCTCGCC‑TGGCGCAAGCATTTGCACCGGTGTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCAGCCACTGGTCGATGCACTGCGTGAAGCCGTGC   <  2:241987/129‑1                                                                                                                                                                                               TTGGGCTGAAGTCGTAAACCACCGCTTTGAGCCCTGAAAACGGCGTCGTGCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCC‑TGGCGCAAGCATTTGCACCGGTGTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4474659‑4474813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttcaGCCACTGGTCGATGCACTGCGTGAAGCCGTGCT  <  NC_002947/4474834‑4474802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.