New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4474813	51 (0.870)	3 (0.050)	3/242	NT	5.8%	coding (723/1536 nt)	PP_3964	transposase
	?	NC_002947	= 4474834	50 (0.910)					coding (702/1536 nt)	PP_3964	transposase

TCGTGCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACGTGGGCCAACAAACCTGTG  >  NC_002947/4474704‑4474981                                                                                                                                    |                                                                                                                                                    tcgtGCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGtt                                                                                                                                   >  4:88968/1‑149 (MQ=255)     gCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTc                                                                                                                               >  7:64711/1‑149 (MQ=255)     gCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTc                                                                                                                               >  3:150540/1‑149 (MQ=255)       tGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTcc                                                                                                                              >  2:42089/1‑148 (MQ=255)        gTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGa                                                                                                                            >  1:136524/1‑149 (MQ=255)             cccAGACATAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCAc                                                                                                                       <  8:99393/149‑1 (MQ=255)              ccAGACATAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACt                                                                                                                      >  5:339771/1‑149 (MQ=255)              ccAGACATAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACt                                                                                                                      >  5:235341/1‑149 (MQ=255)                    aTAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCTTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCa                                                                                                                <  8:229783/149‑1 (MQ=255)                    aTAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTgcgc                                                                                                                  >  5:134965/1‑147 (MQ=255)                    aTAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCa                                                                                                                <  1:219386/149‑1 (MQ=255)                                 gTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCgagcgagc                                                                                                   <  5:186702/149‑1 (MQ=255)                                  ttttCTTCTCGCCTGGCGCAAGCATTTGCACCGGTGGTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTcgagcgag                                                                                                    >  1:242638/1‑148 (MQ=255)                                  ttttCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCa                                                                                                  <  8:226656/149‑1 (MQ=255)                                    ttcttcTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGAACAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAAt                                                                                                >  4:285911/1‑149 (MQ=255)                                      cttctCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAAtt                                                                                               <  2:120684/148‑1 (MQ=255)                                        tctcGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTc                                                                                                           >  8:293520/1‑134 (MQ=255)                                        tctcGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTc                                                                                                           <  7:293520/134‑1 (MQ=255)                                          tcGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAg                                                                                          >  3:174800/1‑149 (MQ=255)                                                   gcAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACg                                                                                 >  7:356172/1‑149 (MQ=255)                                                   gcAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACg                                                                                 >  7:252445/1‑149 (MQ=255)                                                      aGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGc                                                                               >  8:177919/1‑148 (MQ=255)                                                       gCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGTcc                                                                              >  4:281367/1‑148 (MQ=255)                                                             gCACGGGT‑GTCTCATCAGCGTGGATCACTCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGAt                                                                        <  5:328026/148‑1 (MQ=255)                                                               aCCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCgg                                                                                     <  2:216497/133‑1 (MQ=255)                                                                ccGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTTCCAGCCCGGCACGGCCAAAGATTTtc                                                                    >  5:302520/1‑149 (MQ=255)                                                                ccGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTtc                                                                    <  4:150540/149‑1 (MQ=255)                                                                    t‑gtCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCt                                                                <  8:64711/149‑1 (MQ=255)                                                                       tctcATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGc                                                              <  8:252445/149‑1 (MQ=255)                                                                         tcatcaGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTtc                                                                    >  4:146345/1‑141 (MQ=255)                                                                         tcatcaGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTtc                                                                    <  3:146345/141‑1 (MQ=255)                                                                           atcaGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGACgg                                                           >  7:84881/1‑148 (MQ=255)                                                                                  tGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCgg                                                   <  2:242638/149‑1 (MQ=255)                                                                                     aTCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGc                                                  >  8:144548/1‑147 (MQ=255)                                                                                     aTCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGc                                                  >  8:149428/1‑147 (MQ=255)                                                                                     aTCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCaa                                                <  2:136524/149‑1 (MQ=255)                                                                                       cACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAg                                               <  6:339771/148‑1 (MQ=255)                                                                                        aCGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGt                                              <  8:356172/148‑1 (MQ=255)                                                                                          gCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGAt                                           <  3:88968/149‑1 (MQ=255)                                                                                           cccTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATc                                          <  3:281367/149‑1 (MQ=255)                                                                                             cTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCgg                                        <  5:195377/149‑1 (MQ=255)                                                                                                 ttCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCaa                                     >  4:352971/1‑148 (MQ=255)                                                                                                    aGCACGGCTTCACGCAGTGCATCGACCAGTGGCtgaagccgtgctgaatcagggcgtgatccacgctgatgagacaccggtgcaaatgcttgcgccaggcgagaagaaaacccaccgggcctatgtctgggcgtacagcacgacgccgt                                 <  5:191422‑M2/149‑117 (MQ=255)                                                                                                     gCACGGCTTCACGCAGTGCATCGACCAGTGGCtgaagccgtgctgaatcagggcgtgatccacgctgatgagacaccggtgcaaatgcttgcgccaggcgagaagaaaacccaccgggcctatgtctgg                                                    >  1:241987‑M2/1‑32 (MQ=255)                                                                                                     gCACGGCTTCACGCAGTGCATCGACCAGTGGCtgaagccgtgctgaatcagggcgtgatccacgctgatgagacaccggtgcaaatgcttgcgccaggcgagaagaaaacccaccgggcctatgtctgg                                                    <  2:241987‑M2/129‑98 (MQ=255)                                                                                                     gCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTa                                                         >  1:29358/1‑124 (MQ=255)                                                                                                     gCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTa                                                         <  2:29358/124‑1 (MQ=255)                                                                                                     gCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTg                                <  7:177919/149‑1 (MQ=255)                                                                                                     gCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTg                                >  1:345208/1‑149 (MQ=255)                                                                                                               aCGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCGGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATc                       <  8:84881/148‑1 (MQ=255)                                                                                                                 gCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTACCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACg                    >  8:103428/1‑149 (MQ=255)                                                                                                                       cATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGCCCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACGTGGGc               >  8:190846/1‑148 (MQ=255)                                                                                                                          cgcccAGTGGCACAAGCCGCACGCCGGTAAGTCCGACCCACAGCCCCAGCGTCGAGCGAGCAATTGCCAGCCCTGCACTGCCAAAGATTTTCTACTGCCTGTACAGCGTCAAGTGATCGGCAAACTTCGCCACCATCAAGTCGGCcaa            >  4:27569/4‑148 (MQ=17)                                                                                                                                gTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACGTggg                <  6:300143/138‑1 (MQ=255)                                                                                                                                gTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACGTggg                >  5:300143/1‑138 (MQ=255)                                                                                                                                gTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACGTGGGCCAACAAACCt     >  8:326652/1‑149 (MQ=255)                                                                                                                                   gCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACGTGGGCCAACAAACCtgtg  >  8:97409/1‑149 (MQ=255)                                                                                                                                    |                                                                                                                                                    TCGTGCTGTACGCCCAGACATAGGCCCGGTGGGTTTTCTTCTCGCCTGGCGCAAGCATTTGCACCGGT‑GTCTCATCAGCGTGGATCACGCCCTGATTCAGCACGGCTTCACGCAGTGCATCGACCAGTGGCTGAAGCCGCACGCCGGTTTGTCCGACCCACTGCGCCAGGGTCGAGCGAGCAATTGCCAGCCCGGCACGGCCAAAGATTTTCTCCTGCCGGTACAGCGGCAAGTGATCGGCAAACTTGGCCACCATCACGTGGGCCAACAAACCTGTG  >  NC_002947/4474704‑4474981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.