| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4482286 = | 44 (0.750) | 4 (0.070) | 4/244 | NT | 8.7% | coding (292/987 nt) | PP_3974 | LysR family transcriptional regulator |
| ? | NC_002947 | 4482349 = | 42 (0.750) | coding (355/987 nt) | PP_3974 | LysR family transcriptional regulator | |||||
ATTGAGGGCTTTGAAGTCCGCGATGATCGGCGTGAGAAAGTACAACAGCAGCGAGTCGCTGGTAGTGATTCGCAGCTTTCCCAAGGGGCCCTGGCCGGCGCGGGACACCCTGCGGGTGACACTGACGATGTCCAGCTCAACGCGCTCGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4482438‑4482286‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTGGCAAG > NC_002947/4482349‑4482491 ATTGAGGGCTTTGAAGTCCGCGATGATCGGCGTGAGAAAGTACAACAGCAGCGAGTCGCTGGTAGTGATTCGCAGCTTTCCCAAGGGGCCCTGGCCGGCGCGGGACACCCTGCGGGTGACACTGACGATGTCCAGCTCAACGCGCTCG < 1:104600/148‑1 CCCTGGCCGGCGCGGGACACCCTGCGGGTGACACTGACGATGTCCAGCTCAACGCGCTCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGac > 8:340807/1‑147 CTGGCCGGCGCGGGACACCCTGCGGGTGACACTGACGATGTCCAGCTCAACGCGCTCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCT > 3:140633/1‑149 CCGGCGCGGGACACCCTGCGGGTGACACTGACGATGTCCAGCTCAACGCGCTCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAA < 3:270518/140‑1 CCGGCGCGGGACACCCTGCGGGTGACACTGACGATGTCCAGCTCAACGCGCTCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAA > 4:270518/1‑140 CGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTGGC > 7:131312/1‑147 GGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTGGCAAG < 2:104600/149‑1 GGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTGGCAAG < 2:196598/149‑1 ATTGAGGGCTTTGAAGTCCGCGATGATCGGCGTGAGAAAGTACAACAGCAGCGAGTCGCTGGTAGTGATTCGCAGCTTTCCCAAGGGGCCCTGGCCGGCGCGGGACACCCTGCGGGTGACACTGACGATGTCCAGCTCAACGCGCTCGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4482438‑4482286‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTGGCAAG > NC_002947/4482349‑4482491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |