New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4482286 =	44 (0.750)	4 (0.070)	4/244	NT	8.7%	coding (292/987 nt)	PP_3974	LysR family transcriptional regulator
	?	NC_002947	4482349 =	42 (0.750)					coding (355/987 nt)	PP_3974	LysR family transcriptional regulator

GTTGAGAAGACGCTTGGGGTCGCGCTTTTCGATCATCGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTGGCAAG  >  NC_002947/4482202‑4482491                                                                                                                                                    |                                                                                                                                               gtctttgaagtccgcgatgatcggcgtgagaaagtacaacagcagcgagtcgctggtagtgattcgcagctttcccaaggggccCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAggg                                                                                                                                               >  8:340807‑M1/85‑149 (MQ=255)       aagaCGCTTGGGGTCGCGCTTTTCGATCATCGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCtt                                                                                                                                         <  1:6402/149‑1 (MQ=255)        agaCGCTTGGGGTCGCGCTTTTCGATCATCGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTg                                                                                                                                        <  5:262654/149‑1 (MQ=255)                  ggTCGCGCTTTTCGATCATCGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGc                                                                                                                              <  4:77468/149‑1 (MQ=255)                  ggTCGCGCTTTTCGATCATCGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGc                                                                                                                              <  6:319452/149‑1 (MQ=255)                      gcgcTTTTCGATCATCGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAAt                                                                                                                          >  5:13055/1‑149 (MQ=255)                        gcTTTTCGATCATCGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCATGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCa                                                                                                                        <  1:77650/149‑1 (MQ=255)                             tCGATCATCGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTAc                                                                                                                    <  1:197950/148‑1 (MQ=255)                               gATCATCGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCa                                                                                                                  <  7:25759/148‑1 (MQ=255)                                atcatcGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGc                                                                                                                >  6:119455/1‑149 (MQ=255)                                   atcGGAAGTCGGGGTATCTGCTGTCTGCCGAATGCGTCGAGCTGCGTGGGCTGGGGGTGCTCGTTTAGCTGGACATCTTCAGTGTCACCCGCTGGGTGTCGTGCGCCGGCCAGGGCCGCTTGGGAAAGCTGCGAATCACTACCAgagaa                                                                                                             <  8:211371/149‑2 (MQ=255)                                   atcGCAAGGCGGGGTATCTGCTGACTGCCTAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGAGTTGAGCTGGCCATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCCCTACCAGCGAc                                                                                                             >  1:206325/1‑149 (MQ=255)                                    tcGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGc                                                                                                                >  2:252541/1‑145 (MQ=255)                                    tcGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGc                                                                                                                <  1:252541/145‑1 (MQ=255)                                      gCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTc                                                                                                           <  5:119455/148‑1 (MQ=255)                                       cAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCgc                                                                                                         >  5:84126/1‑149 (MQ=255)                                          ggCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCgctgc                                                                                                      >  7:123464/1‑149 (MQ=255)                                              gggTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCtgtt                                                                                                  <  5:260596/149‑1 (MQ=255)                                                              ccGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGcc                                                                                   >  7:204963/1‑148 (MQ=255)                                                                    gCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGatcatc                                                                            >  3:240093/1‑149 (MQ=255)                                                                         gAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGa                                                                       <  4:61874/149‑1 (MQ=255)                                                                               cgtgcgCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCa                                                                  <  6:84126/148‑1 (MQ=255)                                                                                gtgcgCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTa                                                                                               >  7:198799/1‑118 (MQ=255)                                                                                gtgcgCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTa                                                                                               <  8:198799/118‑1 (MQ=255)                                                                                   ccctggccggcgcgggacaccctgcgggtgacactgacgatgtccagctcaacgcgctcggccagGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAaagac                                                             >  8:340807‑M2/66‑147 (MQ=255)                                                                                    gcTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGccc                                                            <  8:204963/149‑1 (MQ=255)                                                                                     ctggccggcgcgggacaccctgcgggtgacactgacgatgtccagctcaacgcgctcggccagGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCt                                                           >  3:140633‑M2/64‑149 (MQ=255)                                                                                         ccggcgcgggacaccctgcgggtgacactgacgatgtccagctcaacgcgctcggccagGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCaaa                                                                >  4:270518‑M2/60‑140 (MQ=255)                                                                                         ccggcgcgggacaccctgcgggtgacactgacgatgtccagctcaacgcgctcggccagGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCaaa                                                                <  3:270518‑M2/81‑1 (MQ=255)                                                                                          CGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAAt                                                       <  1:104600‑M1/148‑1 (MQ=255)                                                                                             gcgcGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAgg                                                   <  6:13055/149‑1 (MQ=255)                                                                                                cgTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGa                                                <  4:240093/149‑1 (MQ=255)                                                                                                      gCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATcgc                                                                          <  3:362293/117‑1 (MQ=255)                                                                                                      gCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATcgc                                                                          >  4:362293/1‑117 (MQ=255)                                                                                                                 tCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTg                               >  4:145050/1‑149 (MQ=255)                                                                                                                  cAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTgg                              >  8:180395/1‑149 (MQ=255)                                                                                                                    gtgtCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTTCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAgggg                                                 <  6:321716/128‑1 (MQ=255)                                                                                                                    gtgtCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTTCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACATCAAAGCCCTCAATGAgggg                                                 >  5:321716/1‑128 (MQ=255)                                                                                                                         aCCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCaa                       >  2:126269/1‑149 (MQ=255)                                                                                                                          cccGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAAc                      >  1:196598/1‑149 (MQ=255)                                                                                                                           ccGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAAc                      >  5:216491/1‑148 (MQ=255)                                                                                                                               aGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGAc                 >  4:14504/1‑149 (MQ=255)                                                                                                                               aGGGTGTCCATCGCCGTCCAGGGCCCCTTGGGAAAGCTGAGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCACTCAATGAAGGGATTACCATAGAGGTGTTGTTCGTCAACCAGAc                 >  4:9375/1‑149 (MQ=255)                                                                                                                                  gtgtCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGtt              <  2:360227/149‑1 (MQ=255)                                                                                                                                  gtgtCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGtt              <  6:69090/149‑1 (MQ=255)                                                                                                                                  gtgtCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGtt              <  3:145050/149‑1 (MQ=255)                                                                                                                                     tCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAg           >  2:191149/1‑149 (MQ=255)                                                                                                                                     tCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGATGTTGGTCGGCAACCAGACGTTGa            <  1:63939/148‑1 (MQ=255)                                                                                                                                          cgcCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTgg      <  6:93998/149‑1 (MQ=255)                                                                                                                                          cgcCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTgg      <  3:301973/149‑1 (MQ=255)                                                                                                                                             cggccagGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTGGc     >  7:131312‑M2/8‑147 (MQ=255)                                                                                                                                              ggccagGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTGGCAAg  <  2:196598‑M2/143‑1 (MQ=255)                                                                                                                                              ggccagGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTGGCAAg  <  2:104600‑M2/143‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               GTTGAGAAGACGCTTGGGGTCGCGCTTTTCGATCATCGCAAGGCGGGGTATCTGCTGACTGCCGAAGGCGTCGAGCTGCGTGCGCTGGCCGAGCGCGTTGAGCTGGACATCGTCAGTGTCACCCGCAGGGTGTCCCGCGCCGGCCAGGGCCCCTTGGGAAAGCTGCGAATCACTACCAGCGACTCGCTGCTGTTGTACTTTCTCACGCCGATCATCGCGGACTTCAAAGCCCTCAATGAGGGGATTACCATCGAGGTGTTGGTCGGCAACCAGACGTTGAGTTTGGCAAG  >  NC_002947/4482202‑4482491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.