New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4583494	31 (0.530)	4 (0.080)	3/218	NT	17.0%	intergenic (‑67/+104)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4583555	13 (0.260)					intergenic (‑128/+43)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

AGTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4583331‑4583494 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccccgtaggagcgggtttaTCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTT  <  NC_002947/4583555‑4583415                                                                                                                                                                                                                                                                                                                   AGTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCC                                                                                                                                                              >  2:115494/1‑149  GTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCG                                                                                                                                                             >  1:297774/1‑149     GAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAG                                                                                                                                                          <  6:370354/149‑1           CGACCTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCTCAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGG                                                                                                                                                    <  3:297794/149‑1                                                                  ATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGT                                                                                              >  1:358608/1‑148                                                                                    GAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCC                                                                           <  4:13548/149‑1                                                                                       CGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCT                                                                        <  1:131321/149‑1                                                                                       CGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCT                                                                        <  2:358608/149‑1                                                                                                                                                  CCCCGTAGGAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACAT             >  4:72835/1‑149                                                                                                                                                          GAGCGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGC     >  6:24360/1‑149                                                                                                                                                             CGGGTTTATCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTT  >  2:328161/1‑149                                                                                                                                                                                                                                                                                                                   AGTCGAAGAACGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4583331‑4583494 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccccgtaggagcgggtttaTCCGCGAACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAGCTCGGATGTCTGTGCATGCAATTGAAAGGAGTCGCACATGGCCAAGCGTT  <  NC_002947/4583555‑4583415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.