| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4583494 | 31 (0.530) | 4 (0.080) | 3/218 | NT | 17.0% | intergenic (‑67/+104) | treSB/glgE | bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase |
| ? | NC_002947 | = 4583555 | 13 (0.260) | intergenic (‑128/+43) | treSB/glgE | bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase | |||||
AACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGGCAC‑AGTCT‑GAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAG > NC_002947/4583415‑4583702 | aaCGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGAtaaacccg > 2:328161‑M2/1‑141 (MQ=255) gCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGAtaaacccgctc > 6:24360‑M2/1‑138 (MQ=255) aTGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGAtaaacccgctcctacgggg > 4:72835‑M2/1‑130 (MQ=255) tgCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑gggggg < 7:209412/148‑1 (MQ=255) aCTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑ggggggggggg > 7:232230/1‑149 (MQ=255) tCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGAACCGGCTTCGGCGGTGTTCGCGGATAAACACGCTCCTAA‑GGGGGGGGGGGcc > 5:319197/1‑148 (MQ=255) cTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGGca > 5:233766/1‑147 (MQ=255) ttCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCAGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGGCAC‑AGt > 1:322764/1‑149 (MQ=255) tCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGGccccggg > 7:294513/1‑143 (MQ=255) aTTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGGGAC‑AGTCT‑g > 5:265535/1‑148 (MQ=255) acaGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑‑GGGGGGGGGGCAC‑AGTCT‑GAACCTTGTTaa > 7:135404/1‑149 (MQ=255) ccGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGGGACAAGGGG‑TAACCTTTTTAAGGGGGTTTTTGGTTGGGcccgttg > 1:309071/1‑144 (MQ=25) aGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGAtaaacccgctcctacgggggatcgagcaagctcggatgtctgtgcatgcaattgaaaggagtcgcacatggccaagcg < 2:358608‑M2/149‑79 (MQ=255) aGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGAtaaacccgctcctacgggggatcgagcaagctcggatgtctgtgcatgcaattgaaaggagtcgcacatggccaagcg < 1:131321‑M2/149‑79 (MQ=255) gggTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGAtaaacccgctcctacgggggatcgagcaagctcggatgtctgtgcatgcaattgaaaggagtcgcacatggccaagcgttc < 4:13548‑M2/149‑82 (MQ=255) acacCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGAtaaacccgctcctacgggggatcgagcaagctcggatgtctgtgcatgcaattgaaaggagtcgcacatggccaagcgttcccgcccggcagccttcat > 1:358608‑M2/1‑49 (MQ=255) ggCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGGCAC‑AGTCT‑GAACATTGTTAACGGGCTTTTTAGATGCGCCAGATGCCGCACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGAGTTGCCGTAcc > 2:135440/1‑149 (MQ=39) gCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTACGGGGGGGGGGGGCAC‑AGGGT‑GAACATTGTTAACGGGGTTTTTCGATGCGCCAGATGCCGAACGCCAGGTGCCAGGGCGATATGGCCATCAATTGGGTGTTGCCTTACCACgcc > 2:4256/1‑146 (MQ=255) tCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGGCAC‑AGTGT‑GAACCTTGTTAACGGGCTTTTTCGATGCGCCACATGCCGAACGGCAGGTGCCAGGGATCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCg > 3:146813/1‑149 (MQ=255) gCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGGCAC‑AGTCT‑GAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGt > 7:138616/1‑149 (MQ=255) ttCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGGC‑C‑AATGTAGACATTTTTTAACGGGGTTTTTAGATGCGCCAAATGCCGAAGGCCAGGGACCCTGGCTGGATGGGCAACCATTGGGTATTGCCTTACCACGACCAGCGATGGCCGt > 2:350058/1‑148 (MQ=255) gATAAACCCGCTCCTAC‑GGGGGGGGGGGCAC‑AGTCT‑GAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAg > 3:56156/1‑149 (MQ=255) | AACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGCGGTGCCGAGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGATAAACCCGCTCCTAC‑GGGGGGGGGGGCAC‑AGTCT‑GAACCTTGTTAACGGGCTTTTTCGATGCGCCAGATGCCGAACGGCAGGTGCCAGGGCTCTATGCGCATCCATTGGGTCTTGCCGTACCACGACCAGCGGTGGCCGTTCATCAG > NC_002947/4583415‑4583702 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |